Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi244g00058 ATGGCAGACCCTGACACAGATGAGGTGTATGTGAAAATGAGGCTGATCCCTTTGAGAGAACATGAATTGGATTTGGAAGATGATTGTTTCTTGGGGAACAATGGATTGGAGGGTCAAGAAAAACCCACCTCTTTTGCCAAGACATTGACACAATCAGATGCTAACAATGGTGGAGGATTCTCTGTGCCTCGTTACTGTGCAGAGACAATCTTCCCAAGGTTGGATTATTCTGCAGAACCTCCAGTTCAGACCATCATTGCCAAGGATATGCATGGACAGTGCTGGAAGTTTAGGCATATCTATAGAGGGACACCTAGGAGGCATCTTTTGACCACTGGATGGAGCAATTTTGTGAACCAGAAGAAGCTTGTTGCTGGGGATTCTATTGTGTTTCTGAGGGCAGAAAATGGTGAATCTGTTGTTGAGGCTGTAACTTGTGCTGTTAATGGCAGACCCTTTGAGGTTGTGTACTACCCAAGGGCTAGCACCCCAGAGTTTTGTGTTAAGGCCTCTGCTGTGAAGGCTTCAATGCAAATACAGTGGTGTTCAGGGATGAGATTCAAAATGCCCTTTGAAACTGAGGATTCTTCTAGGATCAGCTGGTTCATGGGAACCATTTCTTCTGTTCAAGTTGCAGATCCTATTCGTTGGCCTGATTCTCCTTGGCGTCTTCTGCAGGTGGTGTGGGATGAACCAGATTTACTTCAAAATGTCAAGTGTGTAAACCCTTGGTTGGTTGAACTAGTCTCCAACATGCCAACCTTCAATCTCTCTCCATTCTCACCTCCAAGGAAGAAACAACGGTTTATACAAGACCCATATTTTCACCTCATAAACCAACTTCCAATGCCACCACTCTCCAGCAATTTTCTCAGTTATACCAACTCTCTGTGTAACATCAAAGAGAATAGTTCTGCAGGCATACAGGGAGCCAGGCATGCTCAAATTGGACTAACTCCATCTGATTTTCCCTTCAACAAGCTGCAACCAGACATGCTTCTAGGTGGTTTTTCAAGGCTTGACCATGCAACTCAACCTGTTAGGCCTCCTTGTGGAACAACCTCCTATAATAAGAGCAGCACTAAGACCAATGTTGACATATCTTGCTTGTTGACTGTGGGAAATCCTGGCCAGAATTTTAAGGAATCCAATGAAGCAAAAACACCCCACATTTTGTTATTTGGAAAACTCATTCATACTGAGCAGAAGAGTTCAAACAGTTGCTCTGCTAGTACCACAGGGAATAATAGTGTGTCTGAAGGTACTTCCTTGAAGACATCAAATGATTCTTCTCATGACTTGGGTTTTGCTTTGCATCAAAATAGTCCAATTGAGAACTCTTCTGATGGAGGCTCTCCCTGGTACAAGGATCAACACAAGTCTGATCTTGGAGCTGAAAATGTTAGCACATTATGTATGGCTTTATAA 1428 0.4342 MADPDTDEVYVKMRLIPLREHELDLEDDCFLGNNGLEGQEKPTSFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTIIAKDMHGQCWKFRHIYRGTPRRHLLTTGWSNFVNQKKLVAGDSIVFLRAENGESVVEAVTCAVNGRPFEVVYYPRASTPEFCVKASAVKASMQIQWCSGMRFKMPFETEDSSRISWFMGTISSVQVADPIRWPDSPWRLLQVVWDEPDLLQNVKCVNPWLVELVSNMPTFNLSPFSPPRKKQRFIQDPYFHLINQLPMPPLSSNFLSYTNSLCNIKENSSAGIQGARHAQIGLTPSDFPFNKLQPDMLLGGFSRLDHATQPVRPPCGTTSYNKSSTKTNVDISCLLTVGNPGQNFKESNEAKTPHILLFGKLIHTEQKSSNSCSASTTGNNSVSEGTSLKTSNDSSHDLGFALHQNSPIENSSDGGSPWYKDQHKSDLGAENVSTLCMAL 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi244g00058 475 CDD B3_DNA 44 142 IPR003340 GO:0003677
Sebi244g00058 475 Pfam Auxin response factor 143 226 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Sebi244g00058 475 ProSiteProfiles B3 DNA-binding domain profile. 45 147 IPR003340 GO:0003677
Sebi244g00058 475 SMART B3_2 45 147 IPR003340 GO:0003677
Sebi244g00058 475 Gene3D - 180 254 - -
Sebi244g00058 475 MobiDBLite consensus disorder prediction 405 454 - -
Sebi244g00058 475 Pfam B3 DNA binding domain 45 140 IPR003340 GO:0003677
Sebi244g00058 475 FunFam Auxin response factor 181 254 - -
Sebi244g00058 475 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 431 IPR044835 GO:0003677|GO:0006355|GO:0009725
Sebi244g00058 475 MobiDBLite consensus disorder prediction 405 460 - -
Sebi244g00058 475 Gene3D - 43 145 IPR015300 -
Sebi244g00058 475 FunFam Auxin response factor 43 145 - -
Sebi244g00058 475 SUPERFAMILY DNA-binding pseudobarrel domain 38 141 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi244g00058 Sebi-Chr244 1044389 1046703 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi244g00058 1 406 B3 DNA Binding Superfamily AT2G28350 48.996 1.69e-135 404
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Sebi244g00058 B3 7.9e-20 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi244g00058 - - ccaj:109810654 836.639