Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi244g00057 ATGGTCAAAAGAAAAAGAAACTTCAATTTGCCAAACATAAAATGGCAGGCGGTTAGGAAAATTTCACTTGCCGAGAAAATGGTTGGACCAAACTTCATGGATGAGATAGACTGCGGCAGCTTCTTTGACCACATCGACGACCTTCTCGATTTCCCAGTCGAGGACGTCGACGGCGGCGGCGCCTCCTTGCCGTCGGTTGCTGCAACCGGAAACTGCAACTCGCTGGCGAGCATCTGGCCCCCTGAGTCCGAGTCATTTCCCGGCTCCGACTCGGTGTTTTCCGGCAACAGCGCTTCGGACCTCTCCGCGGAGCTTTCAGTTCCGTATGAAGACATAGTCCAATTGGAATGGCTGTCCAATTTTGTGGAGGATTCCTTCAGTGGGGGGAGTCTTACCATGAAGAAAGTGGAGGAGCAGCCATCATGTGCCACCAAGGAGGACTCAGTGCATACCCAATTTCAGACATCAAGCCCAGTTTCTGTCCTTGAAAGCAGCAGCTCCTGCTCTGGTGGCAAAACTGCTTCTGAGATTTACATTCCTGTGCCTTGTGGAAGAGCACGCAGCAAGCGTCCACGCCCTGCAACCTTCAACCCTCGTCCTGCAATGCACCTCATTTCCCCTGCTTCCTCTTTTGTTGGGGAGAACATTCAGCCTAATGTCATCTCTACCAAGGCCTCTTCAGATTCTGAGAATTTTGCTGAGTCTCAACCAGTGACCAAGTTACCAAGGAAAGACTCTGGAGAGCCTAAAAAGAAAAAGAAAATCAAAGTGCCACTTCCTTTAGGTCCATCTGATAGCAACAATCAGAATGGTTCACAACTTGTTAGGAAATGCATGCATTGTGAGATCACCAAGACACCACAATGGAGGGCAGGGCCAATGGGGCCAAAAACTCTCTGCAATGCATGTGGTGTTCGCTATAAGTCAGGCAGGCTCTTCCCTGAATACCGGCCTGCTGCCAGTCCAACTTTTTGTCCATCTTTGCACTCCAATTCACATAAGAAGGTTCTGGAAATGAGATGCAAGGGTGTGGAGAATTCTGGTTTTGAACCACATTCAGCTGCCTCACCTGAACTCATTCCCAATACTAACAGCAGCATTACCCTGGAATACATGTGA 1119 0.4933 MVKRKRNFNLPNIKWQAVRKISLAEKMVGPNFMDEIDCGSFFDHIDDLLDFPVEDVDGGGASLPSVAATGNCNSLASIWPPESESFPGSDSVFSGNSASDLSAELSVPYEDIVQLEWLSNFVEDSFSGGSLTMKKVEEQPSCATKEDSVHTQFQTSSPVSVLESSSSCSGGKTASEIYIPVPCGRARSKRPRPATFNPRPAMHLISPASSFVGENIQPNVISTKASSDSENFAESQPVTKLPRKDSGEPKKKKKIKVPLPLGPSDSNNQNGSQLVRKCMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGRLFPEYRPAASPTFCPSLHSNSHKKVLEMRCKGVENSGFEPHSAASPELIPNTNSSITLEYM 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi244g00057 372 FunFam GATA transcription factor 267 356 - -
Sebi244g00057 372 MobiDBLite consensus disorder prediction 222 270 - -
Sebi244g00057 372 Pfam GATA zinc finger 278 311 IPR000679 GO:0006355|GO:0043565
Sebi244g00057 372 PANTHER GATA TRANSCRIPTION FACTOR 41 345 - -
Sebi244g00057 372 MobiDBLite consensus disorder prediction 222 236 - -
Sebi244g00057 372 SMART GATA_3 272 322 IPR000679 GO:0006355|GO:0043565
Sebi244g00057 372 ProSitePatterns GATA-type zinc finger domain. 278 303 IPR000679 GO:0006355|GO:0043565
Sebi244g00057 372 MobiDBLite consensus disorder prediction 241 255 - -
Sebi244g00057 372 Gene3D - 272 322 IPR013088 GO:0006355|GO:0008270
Sebi244g00057 372 CDD ZnF_GATA 277 324 IPR000679 GO:0006355|GO:0043565
Sebi244g00057 372 PIRSF Txn_fac_GATA_plant 19 366 IPR016679 GO:0003677|GO:0005634|GO:0045893
Sebi244g00057 372 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 276 335 - -
Sebi244g00057 372 ProSiteProfiles GATA-type zinc finger domain profile. 272 308 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi244g00057 Sebi-Chr244 998792 1002964 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi244g00057 39 346 C2C2-Gata Transcription Factor Family AT1G08010 36.013 1.13e-45 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Sebi244g00057 GATA 6.5e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi244g00057 - - gmx:100816641 585.874