Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi244g00045 ATGGAGATTTCCAAGGAAAATTGCATCAATGGCAATGGCTCCTTGAAACTTTGCATCAATGGTGGTAACAATAATACCTCTGACCCTTTGAATTGGGGCATGGCTGCGGATGCATTGAAAGGCAGCCACCTTGATGAGGTGAAGCACATGGTGGAGGAGTACCGGAAACCGGTTGTGATGTTAGGTGGAAAGAGCCTCACCATAGCTCAAGTGGCAGCGGTTGCAACCCACTCAACCGGTGTGGCGGTGGAACTCTCCAAGGAGGCACACCCTGCCGTGAAAGCTAGCAGTGATTGGGTCATTGATAGTATGAACAAAGGCACTGATAGCTATGGAGTCACCACCGGATTCGGTGCAACCTCACACAGGAGAACAAAACAAGGTGGTGCTCTTCAAAACGAGCTCATAAGATTTTTGAATGCTGGCATTTTTGGCAATGGCACAGAATCATGTCACACCTTGCCTCACTCAGCTACAAGGGCAGCCATGCTGGTTAGGATCAACACCTTGCTCCAAGGATATTCAGGGATTAGATTTGAAATCATGGAAGCCATAGCCAAGTTTCTGAACCATAACATAACCCCATGCCTCCCTCTAAGAGGCACAATCACTGCATCAGGTGACTTGGTTCCTCTGTCATATGTTGCTGGCCTTTTGATTGGTAGGCCAAATTCCAAGTCTATTGGACCCAATGGAAAAGTCCTCAATGCTAAAGAGGCCTTTCAAGTAGCTGGAATTGAAAGTGGTTTCTTTGAGTTGCAACCTAAAGAAGGTTTGGCACTAGTGAATGGCACTGCAGTTGGATCTGGCTTGGCTTCCTTGGTTCTTTTTGAAGCAAACATACTTGCTATCCTCTCTGAAGTCTTGTCTGCAATTTTTGCTGAGGTTATGCAAGGAAAACCAGAATTCACTGACCATTTAACTCATAAATTGAAGCACCATCCTGGCCAAATTGAGGCTGCAGCTATAATGGAACATATTTTAGATGGAAGCTCTTATGTTAAGGCTGCACAAAAGGTACATGAGATTGATCCACTTCAGAAGCCTAAACAAGATAGGTATGCTCTTAGAACATCACCTCAATGGCTTGGTCCACAGATTGAAGTAATCAGGCATGCAACAAAGATGATTGAGAGGGAGATAAACTCTGTCAATGACAACCCATTGATTGATGTCTCAAGGAATAAGGCACTTCATGGAGGAAATTTCCAGGGTACCCCAATTGGTGTTTCAATGGATAACACACGTTTAGCTATTGCTTCAATTGGGAAGCTCATATTTGCTCAATTCTCTGAGCTTGTTAATGACTTCTACAACAATGGATTGCCTTCAAATCTAACAGCTAGCCGCAACCCAAGTTTGGATTATGGCTTCAAAGGAGCTGAAATTGCAATGGCATCCTATTGCTCAGAACTTCAATACCTTGCCAATCCTGTCACCAATCATGTCCAGAGTGCTGAGCAACATAACCAGGATGTGAACTCTTTAGGCTTGATTTCCTCAAGAAAAACAGCTGAAGCAATTGACATATTGAAGCTCATGTCCTCTACTTTCATAGTAGCATTGTGCCAAGCCATTGATCTGAGGCATTTGGAGGAAAACTTGAAGAGTGCTGTTAAGAATACTGTGAGTCAAGTGGCTAAGAGGGTTCTCACAGTTGGTGTCAATGGTGAGTTGCATCCATCCAGGTTCTGTGAGAAGGACTTGCTCAAAGTTGTTGACCGTGAGTATGTCTTTGCTTATGTTGATGAACCCTGCAGTGCAACCTATCCTCTAATGCAAAAGCTGAGACATGTCCTAGTTGATCATGCATTGCAAAATGGTGATAAGGAGGCAAATGCAAGTACCTCAATTTTCCAAAAGATAGGAGCTTTTGAGGAAGAACTCAAGGCCCTTTTGCCTAAAGAGGTGGAAAGTGCTAGGATTGAAGTTGAGAATGGAAACCCTGTTGTTCCTAACAGAATTAAGGAATGCAGGTCTTATCCATTATACAAGTTTGTGAGAGAAAATTTGGGTACAACTTTGCTGACAGGTGAGAAAGTGAAGTCACCTGGTGAAGAGTGTGATAAGGTGTTCTCTGCATTGTGTGAAGGGAGGCTTATTGACCCCTTGTTGGACTGTCTAAAGGAGTGGAATGGTGCTCCTCTACCCATATGCTAG 2160 0.4389 MEISKENCINGNGSLKLCINGGNNNTSDPLNWGMAADALKGSHLDEVKHMVEEYRKPVVMLGGKSLTIAQVAAVATHSTGVAVELSKEAHPAVKASSDWVIDSMNKGTDSYGVTTGFGATSHRRTKQGGALQNELIRFLNAGIFGNGTESCHTLPHSATRAAMLVRINTLLQGYSGIRFEIMEAIAKFLNHNITPCLPLRGTITASGDLVPLSYVAGLLIGRPNSKSIGPNGKVLNAKEAFQVAGIESGFFELQPKEGLALVNGTAVGSGLASLVLFEANILAILSEVLSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVKAAQKVHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRHATKMIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLIFAQFSELVNDFYNNGLPSNLTASRNPSLDYGFKGAEIAMASYCSELQYLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAIDILKLMSSTFIVALCQAIDLRHLEENLKSAVKNTVSQVAKRVLTVGVNGELHPSRFCEKDLLKVVDREYVFAYVDEPCSATYPLMQKLRHVLVDHALQNGDKEANASTSIFQKIGAFEEELKALLPKEVESARIEVENGNPVVPNRIKECRSYPLYKFVRENLGTTLLTGEKVKSPGEECDKVFSALCEGRLIDPLLDCLKEWNGAPLPIC 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi244g00045 719 Gene3D Fumarase/aspartase (Central domain) 266 714 - -
Sebi244g00045 719 Gene3D - 19 265 IPR024083 -
Sebi244g00045 719 NCBIfam phenylalanine ammonia-lyase 28 709 IPR005922 GO:0005737|GO:0006559|GO:0016841
Sebi244g00045 719 FunFam Phenylalanine ammonia-lyase 20 265 - -
Sebi244g00045 719 Pfam Aromatic amino acid lyase 66 543 IPR001106 -
Sebi244g00045 719 CDD PAL-HAL 64 529 IPR001106 -
Sebi244g00045 719 Gene3D - 532 653 IPR023144 -
Sebi244g00045 719 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 201 217 IPR022313 GO:0016841
Sebi244g00045 719 FunFam Phenylalanine ammonia-lyase 532 653 - -
Sebi244g00045 719 PANTHER HISTIDINE AMMONIA-LYASE 24 719 IPR001106 -
Sebi244g00045 719 SUPERFAMILY L-aspartase-like 28 719 IPR008948 GO:0003824
Sebi244g00045 719 FunFam Phenylalanine ammonia-lyase 266 562 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi244g00045 Sebi-Chr244 829412 834543 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi244g00045 27 719 Monolignol Biosynthesis Gene Families AT3G53260 83.405 0.0 1236
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi244g00045 K10775 - gmx:100818777 1301.19