Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi244g00021 ATGGCAACAAACAGATTCATATGTGAAGTGTGCAATAAAGGGTTCCAAAGGGAGCAAAACCTACAGCTTCACAGAAGAGGACACAACTTGCCTTGGAAGCTAAAGCAGAAGTCTACAAAAGAGCCAAGGAGAAAGGTATATCTGTGTCCAGAACCCACATGCGTCCATCATGATCCTTCAAGGGCTTTGGGAGACCTCACTGGGATCAAGAAACACTACTCTCGCAAACATGGTGAGAAAAAATGGAAGTGTGAAAAGTGCTCCAAGAAATATGCTGTTCAATCAGATTGGAAAGCACATTCTAAGACTTGTGGCACTAGAGAATACAGATGTGACTGTGGCACCCTCTTCTCTAGGCGAGACAGTTTTATCACTCATAGGGCCTTTTGTGATGCATTAGCTCAAGAGAGTGCAAGACACCCTAATGGCTTAAACCCTTTAGGGACTCATTTGTATGGCACAAATCACATGAGTTTAGGTCTATCCCAAGTGAGTAACCAAATTTCCCAATTCCAAAATCAGAACCAAACAGCTACTAACAACAACCACCACAACTTGTTGCGCCTTGGCAATGGTGGTGCAACAAAATTTGAGCACTTAAATATCCCACCTTTAAATCACCAATCTTCATTTGGAATACAATCATCACCACAATCAATCCCTTCCTCAGCTTTCTTCATGACTGAAACAAATCAAACATTTGAACATCATCATCACCAATCTCAACAATCCCCATTGATCTCAAGCAAGCAACTACATGGTCTAATGCAACTTCCTGATCTCCAAGGTAACCCCAATTCATCCTCCAATCTCTTCAACCTCAGCTTCTTTCCAAATAGCAGTAACAACACTGACCAATTCAACAACAACAACCAAGGAACATCACTTTATATTAACAACAACCTTGTGAGTAGTAGTGATCAAGTTGTTGGTTCAGGTTTGTCTTCACTCTTTGGAAACTCCTCATCATCAGTGCAAAATGAAAACATGTCTCCTCATATGTCTGCAACTGCATTGCTTCAGAAAGCTGCTCAAATGGGTTCAACAACAAGCACCACCAAAGGTGGTTCCTCTCTACTAATAAGAGGAATGTGTAGTAGTTCATCAACCTACAATGACCCCAAATCTGACACTGAAAGGGACATTGTATCTGCTGATAATATTGTTGCCACTTTTGGAAGTGGCCATAGAAGGGGAGAAGGTATAAAATTAACCATGGAAAGTGACCACCACAATCTTCATGGGTTGATGAACTCTATTGCCAATGGGAACACGTCCATATTTGGGAATGAAAACAACCTTGGTCGGTTTCATAATGTGGAAGAATCTAACAATAAGTTGCACCAAAATCTTAATGTGAACTTTGGAGGAGGGTCTGATAAGTTGACATTGGATTTCTTGGGTGTTGGAGGAATGGTGAGAAATATGAATGGTGGATTTTCACAAAGTGAACAACAACGTGTCTTGGGTACTATGAGTTCTTTGAATCCTGACCTAAAATCAGCACATTCAAGCCAACATTTTGGAAGCTCAACGATGCAATGA 1545 0.4097 MATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKSTKEPRRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARHPNGLNPLGTHLYGTNHMSLGLSQVSNQISQFQNQNQTATNNNHHNLLRLGNGGATKFEHLNIPPLNHQSSFGIQSSPQSIPSSAFFMTETNQTFEHHHHQSQQSPLISSKQLHGLMQLPDLQGNPNSSSNLFNLSFFPNSSNNTDQFNNNNQGTSLYINNNLVSSSDQVVGSGLSSLFGNSSSSVQNENMSPHMSATALLQKAAQMGSTTSTTKGGSSLLIRGMCSSSSTYNDPKSDTERDIVSADNIVATFGSGHRRGEGIKLTMESDHHNLHGLMNSIANGNTSIFGNENNLGRFHNVEESNNKLHQNLNVNFGGGSDKLTLDFLGVGGMVRNMNGGFSQSEQQRVLGTMSSLNPDLKSAHSSQHFGSSTMQ 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi244g00021 514 Gene3D Classic Zinc Finger 60 139 - -
Sebi244g00021 514 Gene3D Classic Zinc Finger 2 53 - -
Sebi244g00021 514 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 482 IPR031140 -
Sebi244g00021 514 MobiDBLite consensus disorder prediction 495 514 - -
Sebi244g00021 514 ProSitePatterns Zinc finger C2H2 type domain signature. 8 28 IPR013087 -
Sebi244g00021 514 FunFam Zinc finger protein MAGPIE 2 29 - -
Sebi244g00021 514 FunFam protein indeterminate-domain 5, chloroplastic-like 60 139 - -
Sebi244g00021 514 Coils Coil 161 181 - -
Sebi244g00021 514 ProSiteProfiles Zinc finger C2H2 type domain profile. 6 28 IPR013087 -
Sebi244g00021 514 SMART c2h2final6 6 28 IPR013087 -
Sebi244g00021 514 SMART c2h2final6 82 102 IPR013087 -
Sebi244g00021 514 SMART c2h2final6 47 77 IPR013087 -
Sebi244g00021 514 Pfam Zinc-finger double-stranded RNA-binding 6 28 IPR022755 -
Sebi244g00021 514 SUPERFAMILY beta-beta-alpha zinc fingers 5 102 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi244g00021 Sebi-Chr244 287786 290909 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi244g00021 1 477 C2H2 Transcription Factor Family AT2G02080 47.273 3.93e-117 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sebi244g00021 zf-C2H2_jaz 3.1e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi244g00021 K25870 - gmx:100780268 569.311