Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi244g00013 ATGACTGAAGAATGTGCTGGAAATACAATTGCAACCTCTACTACTACCCCATTAAACTGGTGGTATCTCCAGGCAAATTCTCTTCCTTCCTGGAATGATACTAAACACACATGGAACAACCAAATAAACCCAAACTCTTCCTCTTCTTGTGAAGAGGATATATCATCTTTCACTAATGCTTCCAACCATTCAAGCCTCACCGTTGAATCCTCTCGTAGACTCGTTGATCCACCTGCTCCTTCCTCCAACGAGTTGATGGGAGAAGTACATGCTTCAGATAATCAACTTTGGAGCCATGTTCTATCAGGTGTTGGATCCAATGGGGAGTTGCACAACAACCATCAAGAAATTGGAGAGAATTTTCTGGATGCACTGTCAACTAAAAGCATGGCAAGTGGTATGTTTGAACCAGCATGTGATTACTTGAAGAAACTTGATACAAGTTGGGAATATAGTGCAGGTTCAACTTCATTCAATAGTTTTGAGAAGCACTTAAATGGGTTTAGTGAGGCCCTAATTGAGAATAATGAAAGGTTGACTAAGTTATCTAATCTTGTAAGCACTTGGTCTATTGCCCCACCTGACCCTGAAGTCAGTAGTAGCCACTTTGATCCACAAACAAACAATAACATGTCTTTGAATTCTTCCATGGATCATCACCACTACCCACAATCTGACCCTTTTGGAGGTGGAGGAGCAAGTAATAATAAAAATTCTGGAGGAGCACTGTTACCTTGCTATGATCATCATCATGAGGATCACATGAAGGTGAAACAAGAATATCATCATGCAAGTGAAGTAATAGCAAATAATGGATATCAAAATGGATTCAATAATAGCCTTTCAATTGGAGATAGTGGCAAATTTTACCATGGTGGTGGGTTGCCTAATCTTTCACCATGCACAAGAAATTTCTCAGATGTTATATCATTTAACAGCCGGTTAGGAATTAGGCCACTTCTTGGAGGAATCCATGCACAGAGGCCTAATAATTTCAAATACTTAAACCAATCTGAATCAAAGAAACAAGCTGGCCTTCAAACACCATCACCACCGACAAGAACTATTAATGGAAGAGGAGAGGGAATTACAACACGTGAAGTAAAGAAGAAAAGATCTGAAGAATCATCAGAAGCAATCTTGAAGAAGCCTAAGCAAGATACATCAACAACTTCTTCTTCAAAGGTGCAGGCACCCAAAGTCAAGCTAGGAGACAAGATCACAGCCCTTCAGCAAATTGTGTCTCCATTTGGAAAGACAGATACAGCATCTGTGCTGTTTGAAGCAATAGGATACATAAAGTTTCTCCAAGAACAAGTCCAGCTATTGAGCAACCCTTACTTGAAGACTAATCCACACAAGGATCCAAGGGGAAGTTTGGATAGAAAAGATAAAGAGGAGGCAAAGCTAGACCTTAGGAGCAGAGGTCTTTGTTTAGTTCCAACATCATGTACACCTCTTGTTTATAGAGAAAACACTGGACCAGATTACTGGACACCAGCCTATAGAGGATGTTTGTATAGGTGA 1527 0.4021 MTEECAGNTIATSTTTPLNWWYLQANSLPSWNDTKHTWNNQINPNSSSSCEEDISSFTNASNHSSLTVESSRRLVDPPAPSSNELMGEVHASDNQLWSHVLSGVGSNGELHNNHQEIGENFLDALSTKSMASGMFEPACDYLKKLDTSWEYSAGSTSFNSFEKHLNGFSEALIENNERLTKLSNLVSTWSIAPPDPEVSSSHFDPQTNNNMSLNSSMDHHHYPQSDPFGGGGASNNKNSGGALLPCYDHHHEDHMKVKQEYHHASEVIANNGYQNGFNNSLSIGDSGKFYHGGGLPNLSPCTRNFSDVISFNSRLGIRPLLGGIHAQRPNNFKYLNQSESKKQAGLQTPSPPTRTINGRGEGITTREVKKKRSEESSEAILKKPKQDTSTTSSSKVQAPKVKLGDKITALQQIVSPFGKTDTASVLFEAIGYIKFLQEQVQLLSNPYLKTNPHKDPRGSLDRKDKEEAKLDLRSRGLCLVPTSCTPLVYRENTGPDYWTPAYRGCLYR 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi244g00013 508 CDD bHLH_AtbHLH_like 402 444 IPR045239 -
Sebi244g00013 508 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 402 452 IPR036638 GO:0046983
Sebi244g00013 508 MobiDBLite consensus disorder prediction 363 382 - -
Sebi244g00013 508 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 186 486 - -
Sebi244g00013 508 MobiDBLite consensus disorder prediction 61 80 - -
Sebi244g00013 508 MobiDBLite consensus disorder prediction 447 466 - -
Sebi244g00013 508 MobiDBLite consensus disorder prediction 383 398 - -
Sebi244g00013 508 MobiDBLite consensus disorder prediction 339 360 - -
Sebi244g00013 508 MobiDBLite consensus disorder prediction 339 398 - -
Sebi244g00013 508 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 387 436 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi244g00013 Sebi-Chr244 167937 171050 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi244g00013 31 508 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G31050 33.663 6.41e-47 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi244g00013 - - gmx:100527800 737.643