LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sebi243g00090	ATGGTGAACTTCAGAGAGAACACAGCAGTACCCCGTGAAATGATGAGCCTCTGTGTGCTACTGTTTTTTCTTTCGCTGTTGTTTCCTCTAGAGGTTAACTCATACGTCCCTGTTGATAATTATGCTGTTAACTGTGGTGACTCAAATAATGTTACCATTTATAATCGTTTCTGGGTTGGAGACGTTAGCAGCAAGCAGTACTTTTCTATCATTGAACCACAAACAGGGCAACCATCTGTCAAAGCCGAGGCTCTTAACCGTTTTCCAGGTAACCCAGTATTTCCGGTTGACTCCGCACGAATCTCTCGCTCCGAATTCACATACTCCTTTGTTAATGTCACTAGCGGCCCAAAGTTCCTTCGCCTTCACTTTTATCCAACGTCATATCTTAACTTTGAACCCTACAACGCCCTCTTCTCTATCATAGCAGGAAATCTCACCCTTCTCAAAGACTTCAACGCCTCACTTTGGGTTCACAAAGATGAAGAGACCATAACCAAAGAATATTGTCTCAACGTGGAAACAGGGGAGAGGCTAAACGTAACCTTCCTTCCCAGCACCAACCACTCTGATGCTTATGCTTTTATCAACGGGATTGAGGTTGTGTCTATGCCTCACTTTCTCTATTACACTGATCCCACTGAGTTAGATTATAATGTTAAGCTCGTGGGGGGTCATGATGGCACCCCATTCCCAATTCAAAACGACAGAGCTCTTGAGACAATTTACAGAGTCAATGTTGGCGATAATCAGGTTCCACCGAGCAACGATACTGGCATGTTCCGGAATTGGGACAATGATTATCCTGGCTACTTGGAGAAGCAATACCCACAAAGTGTGTCAACTGGCTATGCACTTCAACTCAACTATAGAATTAATGCTGTTCCCAATTACACAGCACCAGCCGATGTGTACTTAACTGCCAGAAGTTACGGGATGGATGCTACCGAGGATTATAATGTAACTTGGAATTTCGAAGTGGATCCACAGTTTAATTATATGGTCAGGTTACATTTCTGCGAGTTTGACCCGCTGATCCAGCATGGAGGCGATAGAGTTTTTCAGATTTTTATAGTTGAGACTTTGGCTGAGGAAAACGCCGATGTGATAAACTGGAGTGGCGGTAACTTAGTTCCTGTTCATAAGGATTATGTTGTGCTCAATCTCAACTCCACCCAAGGAGGAAGTGCTAGGAGTGAGACGGTCAATCTTTCGATTAAGCTGCAACGATTGCCAAAGAACATAATCAGCAAACAACGTGATGTCATACTGAATGGTATTGAGATTTTCAAAATAAGTGATGAGCATAACAATCTCGCCGGACCGAATCCCAAACTCATTCTATCTCCACCCCAACAAGGATCACAAACCCAATCGTCCAAACACGCAAAGACCACTACAATTATCGTTGTGGTGGTTGCAGTTTCAGGCCTCATGCTAGTAGCGTCTGTTATTGGCATCATGGTTTTTCAGCGAAAAAGGATAAGTGGTGATCAAGAGAGGGACGAAATTCGTGGAAGACAAAGACGGAAGATCAGAGCTGCCACAAACAACTTCGATGACGTTTTCATCATCGGGGTTGGAGGGTTTGGCCACGTGTATAAAGGTTACATCGATGGAACCACACCCGTTGCGATCAAACGCCTCAAATCAGGTTCTCAACAAGGTGCCAAGGAGTTCATGAACGAGATCGAGATGCTTTCTCAGCTTCGCCATCTTCATTTAGTGTCCCTTATTGGCTACTGCAATGATGGTGTAGAGATGATACTCGTTTACGACTTCATGGCGCGTGGCACTCTCCGCGAGTATCTCTACCATTCTGATAACCAACCCCTTTCGTGGAAGAAGAGGCTTGAGATCTTATTGGGTGCAGCGAGAGGGTTGCATTATCTTCATACAGGTGCGCAGCACAATATCATTCACCGTGACGTGAAGAGCACGAATATCTTGTTGGATGAGAAATGGGTGGCCAAGGTCTCTGATTTTGGGTTATCGAAAGTGGGACCCACAGGGATGTCGACGACCCACGTCAGCACTGTAGTGAAGGGGAGCCTTGGGTATTTGGACCCGGAATACTACAAGCGTCAACGGTTGACTCTTAAGTCTGACGTGTACTCATTCGGTGTGGTGCTTCTTGAAGTGCTGTGCGGGAGGCCTCCTTTTGTTCGTGCGTTGGGCAAGGACGAGGCAAATTTGGTTGATTGGGTTCGGAGGTGTTACGATAAAGGACAGATTGATCAGACGGTGGATCCATTTATAAAGGATTCTGTTACGGCTGAGTGTTTGAAATGTTACAGCCAGATGGCGATGAGTTGCTTGCATGATGATGGGAATCAACGGCCCTCGATGAGTGATGTGGTTGGGGCATTGCAGTTTGCGTTGCATTTGGCTGTGGAGGGTGAAGAAGAAGACAACAAGTTGGGTGGGACCCATGAAGATGGAAACAGTAAGGAAAGACTACGGTTACCGCAGTTTATTAATATGAGTGATGAAGGGAGTGATGTGCGATTCACTAGTAGTGATAACACTGGGTCCCAGACCAGCGGCATAACCACAGTCTCAGCCAGTACTGAGGAACAACCTTTGGTTTCTTCTGCTACGGTCTTCTCAGAGATTGGGAACCCAAGAGCACGATAG	2637	0.4573	MVNFRENTAVPREMMSLCVLLFFLSLLFPLEVNSYVPVDNYAVNCGDSNNVTIYNRFWVGDVSSKQYFSIIEPQTGQPSVKAEALNRFPGNPVFPVDSARISRSEFTYSFVNVTSGPKFLRLHFYPTSYLNFEPYNALFSIIAGNLTLLKDFNASLWVHKDEETITKEYCLNVETGERLNVTFLPSTNHSDAYAFINGIEVVSMPHFLYYTDPTELDYNVKLVGGHDGTPFPIQNDRALETIYRVNVGDNQVPPSNDTGMFRNWDNDYPGYLEKQYPQSVSTGYALQLNYRINAVPNYTAPADVYLTARSYGMDATEDYNVTWNFEVDPQFNYMVRLHFCEFDPLIQHGGDRVFQIFIVETLAEENADVINWSGGNLVPVHKDYVVLNLNSTQGGSARSETVNLSIKLQRLPKNIISKQRDVILNGIEIFKISDEHNNLAGPNPKLILSPPQQGSQTQSSKHAKTTTIIVVVVAVSGLMLVASVIGIMVFQRKRISGDQERDEIRGRQRRKIRAATNNFDDVFIIGVGGFGHVYKGYIDGTTPVAIKRLKSGSQQGAKEFMNEIEMLSQLRHLHLVSLIGYCNDGVEMILVYDFMARGTLREYLYHSDNQPLSWKKRLEILLGAARGLHYLHTGAQHNIIHRDVKSTNILLDEKWVAKVSDFGLSKVGPTGMSTTHVSTVVKGSLGYLDPEYYKRQRLTLKSDVYSFGVVLLEVLCGRPPFVRALGKDEANLVDWVRRCYDKGQIDQTVDPFIKDSVTAECLKCYSQMAMSCLHDDGNQRPSMSDVVGALQFALHLAVEGEEEDNKLGGTHEDGNSKERLRLPQFINMSDEGSDVRFTSSDNTGSQTSGITTVSASTEEQPLVSSATVFSEIGNPRAR	878

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sebi243g00090	878	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	639	651	IPR008271	GO:0004672\|GO:0006468
	Sebi243g00090	878	Pfam	Protein tyrosine and serine/threonine kinase	525	789	IPR001245	GO:0004672\|GO:0006468
	Sebi243g00090	878	SMART	serkin_6	519	793	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Sebi243g00090	878	CDD	STKc_IRAK	525	787	-	-
	Sebi243g00090	878	ProSitePatterns	Protein kinases ATP-binding region signature.	525	547	IPR017441	GO:0005524
	Sebi243g00090	878	SUPERFAMILY	Protein kinase-like (PK-like)	507	792	IPR011009	-
	Sebi243g00090	878	FunFam	receptor-like protein kinase FERONIA	490	594	-	-
	Sebi243g00090	878	FunFam	FERONIA receptor-like kinase	237	433	-	-
	Sebi243g00090	878	PANTHER	OS03G0124300 PROTEIN-RELATED	17	494	IPR046957	GO:0004672
	Sebi243g00090	878	ProSiteProfiles	Protein kinase domain profile.	519	798	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Sebi243g00090	878	MobiDBLite	consensus disorder prediction	831	878	-	-
	Sebi243g00090	878	Pfam	Malectin-like domain	44	432	IPR024788	-
	Sebi243g00090	878	Gene3D	-	40	204	-	-
	Sebi243g00090	878	Gene3D	-	237	433	-	-
	Sebi243g00090	878	FunFam	Receptor-like protein kinase FERONIA	595	812	-	-
	Sebi243g00090	878	MobiDBLite	consensus disorder prediction	831	871	-	-
	Sebi243g00090	878	FunFam	FERONIA receptor-like kinase	40	205	-	-
	Sebi243g00090	878	Gene3D	Transferase(Phosphotransferase) domain 1	595	808	-	-
	Sebi243g00090	878	Gene3D	Phosphorylase Kinase; domain 1	489	594	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sebi243g00090	Sebi-Chr243	1329348	1332031	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sebi243g00090	35	878	Receptor kinase-like Gene Family	AT3G51550	44.580	0.0	657

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_CrRLK1L-1	Sebi243g00090		Malectin_like	7.9e-34	CL0202

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sebi243g00090	-		-	mtr:25497555	959.903