Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi243g00058 ATGGAGAAGATGAAGAAGCTAGAGAGGATGGGAAGGGGAAGAGTAGAGTTGAAGAGGATAGAGAACAAGATAAACAGGCAAGTCACATTTGCAAAGAGGAGAAATGGGCTTCTCAAGAAAGCTTATGAGTTATCTGTTCTTTGTGATGCTGAGGTTGCTCTCATCATCTTCTCTAACCGTGGCAAGCTTTATGAGTTCTCTAGCACCTCTAACATGCTCAAGACTCTTGATAGATACCAGAAATGCAGTTATGGTGCTGTGGAAGTTAGCAAACCTGCCAAAGAACTTGAGAGCAGCTACCGTGAATACTTGAAGCTGAAAGGAAGATTTGAATCTCTTCAAAGGACCCAGAGAAACCTTCTAGGGGAAGACTTGGGCCCACTGAATTCCAAAGAACTTGAGCAGCTTGAACGGCAATTGGATTCATCTCTGAAGCAAGTGAGGTCCACAAAGACACAATTCATGCTGGACCAATTAGCTGATCTTCAAAATAAGGAACAGATGTTGGTAGATGCAAACAGAACCTTAACAATGAAGCTGGATGAAATCAATTCAAGAAATCAATACAGGCAATCATGGGAAGCTGGTGATCAAAGTATGCCCTATGGTGGTCCACAGAATGCTCACTCTCAGGGCTTCTTCCAGCCATTGGAATGCAATCCCACATTGCAGATTGGTCCTGACTACAGGTACAACACTGTAGCTACAGATCAGATAACTGCCACAACTCAAGCTCAACAAGTGAATGGGTTTATTCCTGGATGGATGCTTTGA 774 0.4328 MEKMKKLERMGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFSSTSNMLKTLDRYQKCSYGAVEVSKPAKELESSYREYLKLKGRFESLQRTQRNLLGEDLGPLNSKELEQLERQLDSSLKQVRSTKTQFMLDQLADLQNKEQMLVDANRTLTMKLDEINSRNQYRQSWEAGDQSMPYGGPQNAHSQGFFQPLECNPTLQIGPDYRYNTVATDQITATTQAQQVNGFIPGWML 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi243g00058 257 Coils Coil 133 153 - -
Sebi243g00058 257 ProSitePatterns MADS-box domain signature. 12 66 IPR002100 GO:0003677|GO:0046983
Sebi243g00058 257 ProSiteProfiles MADS-box domain profile. 10 70 IPR002100 GO:0003677|GO:0046983
Sebi243g00058 257 Gene3D - 22 92 IPR036879 GO:0003677|GO:0046983
Sebi243g00058 257 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 19 66 IPR002100 GO:0003677|GO:0046983
Sebi243g00058 257 CDD MADS_MEF2_like 11 85 IPR033896 GO:0000977|GO:0045944
Sebi243g00058 257 ProSiteProfiles K-box domain profile. 96 186 IPR002487 GO:0003700|GO:0005634|GO:0006355
Sebi243g00058 257 PANTHER SERUM RESPONSE FACTOR HOMOLOG 10 178 - -
Sebi243g00058 257 SUPERFAMILY SRF-like 11 85 IPR036879 GO:0003677|GO:0046983
Sebi243g00058 257 PRINTS MADS domain signature 32 47 IPR002100 GO:0003677|GO:0046983
Sebi243g00058 257 PRINTS MADS domain signature 12 32 IPR002100 GO:0003677|GO:0046983
Sebi243g00058 257 PRINTS MADS domain signature 47 68 IPR002100 GO:0003677|GO:0046983
Sebi243g00058 257 Pfam K-box region 94 180 IPR002487 GO:0003700|GO:0005634|GO:0006355
Sebi243g00058 257 SMART madsneu2 10 69 IPR002100 GO:0003677|GO:0046983
Sebi243g00058 257 FunFam MADS-box transcription factor 1 22 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi243g00058 Sebi-Chr243 802245 813019 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi243g00058 10 257 MADS-box Gene Family AT5G15800 75.285 3.65e-125 354
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Sebi243g00058 K-box 1.9e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi243g00058 K09264 - gmx:100788427 443.736