Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi243g00055 ATGGGAAGAGGTAGGGTTGAGTTGAAACGGATCGAGAACAAAACAAGCCAACAAGTGACGTTTTCAAAGAGAAGAAGTGGACTTTTGAAGAAAGCGCATGAAATCTCTGTGCTTTGTGATGCTCAGGTAGCCTTGATTATGTTCTCTACCAAAGGGAAACTTTTTGAGTTTTCCTCTGAATCCAGCATGGAAGACATCCTGGAACGATATGAAAGGCAAAACCATACAGAACTTGCTGGAGCTAACAATGAAACACAGGGAAACTGGTCTTTCGAGTACACCAAGCTCACTGCTAAAGTTCAAGTCTTGGAGAAGAACATAAGGAACTACGTGGGACGAGATCTGGATCCCTTAAGTATGAAGGAGCTTCAGAGTTTGGAGCAACAGCTTGACACATCTCTAAAGCGCATCCGAACAAGAAAGAACCAAGTTATGAATCAATCCATCTCGGAGCTGCATAAAACGGCAAGGGCATTGCAGGAGCAAAACAGCAAGCTAGCAAAGATGAAGGAGAAAGAGAAGACATTAACTGAACGTCCATCCAGCTTCCCAGAAACCATAGGCCAATGTTCATCCACCTTTAACTTATTTTCTCCAGAGGTACTGCCACCACAAAGACTGGTTCCTTCACTAAATCTCAGTGGGACTTTACAAGGAAGAGCATTGGAAGATATGACTGAAGGTCAAACCATCCCTAGTAGCAGTGCTCTGATTCCACCATGGATGCTGCATCATCTGACTAGTTAG 747 0.4378 MGRGRVELKRIENKTSQQVTFSKRRSGLLKKAHEISVLCDAQVALIMFSTKGKLFEFSSESSMEDILERYERQNHTELAGANNETQGNWSFEYTKLTAKVQVLEKNIRNYVGRDLDPLSMKELQSLEQQLDTSLKRIRTRKNQVMNQSISELHKTARALQEQNSKLAKMKEKEKTLTERPSSFPETIGQCSSTFNLFSPEVLPPQRLVPSLNLSGTLQGRALEDMTEGQTIPSSSALIPPWMLHHLTS 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi243g00055 248 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Sebi243g00055 248 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 164 - -
Sebi243g00055 248 Coils Coil 123 179 - -
Sebi243g00055 248 SUPERFAMILY SRF-like 2 88 IPR036879 GO:0003677|GO:0046983
Sebi243g00055 248 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Sebi243g00055 248 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Sebi243g00055 248 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Sebi243g00055 248 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Sebi243g00055 248 Pfam K-box region 84 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Sebi243g00055 248 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Sebi243g00055 248 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Sebi243g00055 248 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Sebi243g00055 248 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
Sebi243g00055 248 FunFam MADS-box transcription factor MADS-MC 13 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi243g00055 Sebi-Chr243 773580 781038 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi243g00055 1 176 MADS-box Gene Family AT1G26310 60.221 7.06e-73 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Sebi243g00055 K-box 5.2e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi243g00055 K09264 - gmx:100786580 343.584