Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi243g00052 ATGACTTCTACAGCATCACTTGATAATTCTCTTTCTGACATGTACCGTTCTCCTCCAAGGCCCTTGCCTTATGATGCAGACCCCAGGTATTTCCGCTCACAGCATGATGGGCTAGTTTCAAGACGTGAGAAGGGTTCAAGTCATTTGAATGAGGAGTCAGAACCTCTAAGAAGTGATGCAGATATGGACCCAGAATCTTTAAATTCAGGTGATAAGTGGAATGGAAGTACTGGCGAAGATGGATCAAAGGAATACCGTTCTAAGTCCTCAGTCAGACTTTCATCTGCAAAACTTACAACTGGAACCGATCTTGTCTATGCATCATCAGAAGAGGAGGATGTCTGTCCAACTTGTCTTGAAGAATACACTGAAGAGAATCCGAAGATAGTGACAAAATGCTCTCATCATTTTCATCTTGGTTGCATATATGAGTGGATGGAGAGAAGTGACAACTGTCCAGTTTGTGGGAAGGTGATGGTATTCGATGAAACGACTTGA 498 0.4277 MTSTASLDNSLSDMYRSPPRPLPYDADPRYFRSQHDGLVSRREKGSSHLNEESEPLRSDADMDPESLNSGDKWNGSTGEDGSKEYRSKSSVRLSSAKLTTGTDLVYASSEEEDVCPTCLEEYTEENPKIVTKCSHHFHLGCIYEWMERSDNCPVCGKVMVFDETT 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi243g00052 165 ProSiteProfiles Zinc finger RING-type profile. 115 155 IPR001841 -
Sebi243g00052 165 MobiDBLite consensus disorder prediction 29 66 - -
Sebi243g00052 165 FunFam E3 ubiquitin-protein ligase At3g02290-like 92 162 - -
Sebi243g00052 165 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 4 163 - -
Sebi243g00052 165 SUPERFAMILY RING/U-box 110 162 - -
Sebi243g00052 165 CDD RING-H2_AIRP1-like 111 159 - -
Sebi243g00052 165 SMART ring_2 115 155 IPR001841 -
Sebi243g00052 165 MobiDBLite consensus disorder prediction 1 94 - -
Sebi243g00052 165 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 91 162 IPR013083 -
Sebi243g00052 165 Pfam RING-H2 zinc finger domain 110 155 IPR024766 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi243g00052 Sebi-Chr243 755860 759488 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi243g00052 1 164 C3H Transcription Factor Family AT5G15790 61.905 1.00e-71 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi243g00052 - - gmx:100788192 310.842