Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi243g00040 ATGGGAGGAGAGTTATTGCTTCCATTGCCTCTCCTTGCTCAGAGAATTTACAAATCTGAATGGCTAGCTGTGGGGGGTATTATCAGAGATGCCGATGGTGCCTTCATTGCTGGATTTTCTGCTAACATTGGTGTTTGCTCTTCCCTGAAGGCTGAGCTCTGGGGCCTCTTTCATGGACTTCAACTTGTCAATAATCTCCAATTGAAGAATGTCATCATAAATTCTGATTCTAGCCTGGCTATTTCCTTGCGGAGATGGGCCATTCTAAAGCCTATTGGCATCCATTATTTTGATTCTCCTCCCCTGAACTTAGGTTCTATCTTGTTAGAAGATATTAGAGGTGTTTGCTTCTCTAGATTTGTTCTAGCGCCGCTGTTCATCACTAGTTCGTCGGGCAGCGTCGCTGTTCATCGCTTGTTCGTCGGGCAGCGCCGCTATTCACTCCCGACGTTTGAAGTCGTTGGAAGGAAAAAGAGAAGGAGTTTCGAGCTGCTTGGCAAGGAAGGTGAACATAATGACAATGAGTGGAGAGAAAGCCATGAGAATTGTGAGGGAATGAGTAATTTATCTGAACATAAGGAAGATGAGAATGATGGAAATGAAAATGAGGGAAGCGAAAATGAATTGAGTGAACACATTTGTATTGATAACTTCCAGGACATTGTTAAAAACAATCTTGTATCTAAAAGTCCTGAGCAGATTATGTTAAATTGGTATGGGAGGTTTAACGGGTTTGCTGTTCGAAAAAGCAAGATAAGTTATAATTGTCGGAAGGAAATTGTTGGTCGTGACTTTTTGTGTAACAAAGAAGGCAAACGGAGAAAACAAAATGATGATAGTGATTCAGAAGAAGATCCCGAACGAGAGCCTAAACCACAGACTAGGTGTGAGTGTAAAGCTAAATTTCGTGTGCATGTTGATTTTAATTCACGTCGGTGGTATGTGACGTGTTTTGACAATAGACATAATCATGAGCTGCTAGATGAAAAGTTTTTTGGTATACTACCAGCTCATAGAAATATGAGCGAAGGGGATATTATAGAGATGAATAATATGTTAAAGGCTGGTATAGGGGCTCCACAAATTTATAATTCATTTGCAAGCCAAGCAGGAGGGACCACGTCACGGTGCGAGGGTCTACATTCTGAAGTTGGGAAGTTCGTTAATTCAAGATTGAGTTTGTGTGAGTTTTTGCAACATTACTATTGCTGTTTGACTCACATGCATTACAAGGAAGTGCAAGATGACTTCAAATCAGTGCATGAGAGGGCAGCCCATGTGAAAGTTGTTCGGTGGAAAGAAAAATTCTCATGCTTCATTTACACTGTTTCAAAGTATAGAAAATTAGGGAGGGAGTGGAATGTGACATTCTACCCTGCTGAAAGTGTTTACAAATGTTCTTATATGAGAATGGAATCAATTGGGCTTCCATGTGACCATATAATTGGGGTGTTGGTTTACCAAGATATTTCAGAATTACCTAGAGCCTTAGTACTTGATCGATGGTCAAAGGATGCAAAGTTGGGACTTCATGGTATGAATGGTAATGGATTTAATTTCTGTGACCCTCAATTGACAGCTAGATATTGGGCTTTGATGCACAGGTTTAGGGATGTGGCACGTGAAGCTTATGAAAATTTGGAAGATTACCATGATGCAGATGAGAATGCCATTAGTTTCCTTGCCCAGCTGAAAGAAAAAAAGGCAAGGAGGAGTGGTGGAGATGCGACTGTCGTGGTTAATGAAAATAATAATGTGGGGGATCCTTTACGGGCTAGAACAAAAGGAGCAGGTGGTGGAAGGTCAACACAAGCAGGAACGAGAAGGAGGCGTCCTCATCATTGCCGTAAATGTAAAGTTGCAGGGCACAATATTAAGACTTGCCCTTTACTGCGACCATCAAGTTCCCAACCAGTACATGTAACAAGAGGTGCTTCTATAGATGGTGATAATGCAAAAGAAGTCATAGGGGATACGGAAAATAACATGGACACAAGTGACATGTATTGGTCACCTATAGGTGACAACTACTGA 2034 0.4135 MGGELLLPLPLLAQRIYKSEWLAVGGIIRDADGAFIAGFSANIGVCSSLKAELWGLFHGLQLVNNLQLKNVIINSDSSLAISLRRWAILKPIGIHYFDSPPLNLGSILLEDIRGVCFSRFVLAPLFITSSSGSVAVHRLFVGQRRYSLPTFEVVGRKKRRSFELLGKEGEHNDNEWRESHENCEGMSNLSEHKEDENDGNENEGSENELSEHICIDNFQDIVKNNLVSKSPEQIMLNWYGRFNGFAVRKSKISYNCRKEIVGRDFLCNKEGKRRKQNDDSDSEEDPEREPKPQTRCECKAKFRVHVDFNSRRWYVTCFDNRHNHELLDEKFFGILPAHRNMSEGDIIEMNNMLKAGIGAPQIYNSFASQAGGTTSRCEGLHSEVGKFVNSRLSLCEFLQHYYCCLTHMHYKEVQDDFKSVHERAAHVKVVRWKEKFSCFIYTVSKYRKLGREWNVTFYPAESVYKCSYMRMESIGLPCDHIIGVLVYQDISELPRALVLDRWSKDAKLGLHGMNGNGFNFCDPQLTARYWALMHRFRDVAREAYENLEDYHDADENAISFLAQLKEKKARRSGGDATVVVNENNNVGDPLRARTKGAGGGRSTQAGTRRRRPHHCRKCKVAGHNIKTCPLLRPSSSQPVHVTRGASIDGDNAKEVIGDTENNMDTSDMYWSPIGDNY 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi243g00040 677 Gene3D - 18 93 IPR036397 GO:0003676
Sebi243g00040 677 MobiDBLite consensus disorder prediction 271 294 - -
Sebi243g00040 677 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 373 555 IPR031052 GO:0006355
Sebi243g00040 677 SUPERFAMILY Ribonuclease H-like 22 83 IPR012337 -
Sebi243g00040 677 CDD RNase_H_like 23 83 IPR044730 -
Sebi243g00040 677 MobiDBLite consensus disorder prediction 579 614 - -
Sebi243g00040 677 Pfam Reverse transcriptase-like 23 80 IPR002156 GO:0003676|GO:0004523
Sebi243g00040 677 Pfam FAR1 DNA-binding domain 238 327 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi243g00040 Sebi-Chr243 544632 548742 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Sebi243g00040 FAR1 1.5e-16 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi243g00040 - - tpra:123905832 187.193