Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi243g00018 ATGGATGTTGGTGTTGTACCAGAATCAACAATGAGGGATGTTTCAAATTCCTACTCAAGACCCCCCAAAGGGACAATTGACCTATTTTCTGGACCTCCCATTCAGATGGCTTCCCATCTCACTCCAATGGACAGGGAGGCCAGAGTCCTAAGGTATAGGGAGAAAAAGAAGACAAGAAAATTTGAGAAGACAATCAGGTATGCCTCAAGGAAGGCCTATGCAGAGACTAGACCTCGCATAAAAGGACGATTTGCCAAGAGAACTGATGTAGAAGCTGAAGTTGATCAGATGTTCTCCACAACACTAATGACAGAAGTTGGATATGGCATTGTTCCCTCTTTCTGA 345 0.4406 MDVGVVPESTMRDVSNSYSRPPKGTIDLFSGPPIQMASHLTPMDREARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRTDVEAEVDQMFSTTLMTEVGYGIVPSF 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi243g00018 114 ProSiteProfiles CCT domain profile. 45 87 IPR010402 GO:0005515
Sebi243g00018 114 Pfam CCT motif 45 87 IPR010402 GO:0005515
Sebi243g00018 114 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 2 104 IPR045281 GO:0009909
Sebi243g00018 114 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi243g00018 Sebi-Chr243 210266 210610 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi243g00018 1 114 C2C2-CO-like Transcription Factor Family AT3G02380 71.053 3.71e-49 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Sebi243g00018 CCT 1.4e-18 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi243g00018 - K12135 var:108323717 205.682