Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi243g00017 ATGGCTATAAAAGATTCTTTAGAGGATCCACATGGTGTTCTAGATAATTGGGATGGTGATGCAGTTGATCCATGTAGCTGGACTATGGTCACTTGTTCTAGTGAAAACTTGGTCATTGGCTTGGGCACTCCAAGTCAAAGTTTGTCTGGTACTCTATCTTCAAGCATAGGCAACTTAACCAACCTTCAGATTGTGTTGCTACAGAATAACAACATAAGTGGACCAATCCCTTTAGAGCTAGGCAAACTCCCTAGGCTTCAAACACTTGATCTCTCTAATAACTTCTTCAGTGGGGAAATTCCTTCCACTCTTGGTCACCTCAGAAGCCTTCAATACCTGAGGCTCAATAATAACAGTCTTGTTGGTGAATGTCCAGAATCACTGGCTAACATGACACAGCTTGCTTTTCTCATTCTTGGCAACCCCCTTATTTGTGCTACTGGAAAAGAGCCAAACTGCCATGGGATGACACTGATGCCCATGTCCATGAACTTAAACAATACTGAAGATGCTTTACCATCAGGCAGACCAAAAACTCATAAAATGGCCATTGCCTTTGGCTTGAGCCTGGGATGTCTCTGCCTAATAGTTCTTGGTTTTGGACTTGTTCTTTGGTGGAGACACAAGCATAATCAACAAGCATTCTTTGATGTTAAAGGTAAGCCAGTCCTGGACTGGGGCACAAGGAAGAATATTGCTTTGGGAGCAGCAAGGGGACTACTTTACCTTCATGAGCAGTGTGATCCAAAGATAATTCATAGGGATGTGAAAGCTGCTAACATATTGCTTGATGACTATTGTGAAGCTGTAGTTGGAGATTTTGGATTGGCAAAGCTTTTGGATCACCAAGATTCACATGTCACAACTGCAGTGAGGGGCACTGTGGGGCATATTGCCCCAGAATATCTATCCACAGGACAATCCTCTGAGAAGACTGATGTCTTTGGATTTGGCATTCTCCTCCTTGAATTAATCACAGGCCTAAGAGCCTTAGAATTTGGAAAAGCAGCTAACCAAAAAGGAGCCATGCTTGATTGGGTAAAGAAAATTCATCAAGAGAAGAAGCTTGAATTGCTTGTAGACAAGGATCTCAAGAGTAACTATGACAGGATTGAGCTTGAGGAAATGGTTCAAGTGGCTCTCTTGTGTACTCAATACCTTCCAGGCCACAGACCAAAAATGTCTGAAGTGGTACGCATGCTTGAAGGTGATGGGTTAGCAGAAAGATGGGAAGCTTCTCAAAGGGCTGACACAACCAAGTGCAAACCTCCCCATGAGTCCTCTTCATCAGATAGGTATTCTGATCTTACTGATGACTCTTATTGTTAG 1329 0.4296 MAIKDSLEDPHGVLDNWDGDAVDPCSWTMVTCSSENLVIGLGTPSQSLSGTLSSSIGNLTNLQIVLLQNNNISGPIPLELGKLPRLQTLDLSNNFFSGEIPSTLGHLRSLQYLRLNNNSLVGECPESLANMTQLAFLILGNPLICATGKEPNCHGMTLMPMSMNLNNTEDALPSGRPKTHKMAIAFGLSLGCLCLIVLGFGLVLWWRHKHNQQAFFDVKGKPVLDWGTRKNIALGAARGLLYLHEQCDPKIIHRDVKAANILLDDYCEAVVGDFGLAKLLDHQDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGLRALEFGKAANQKGAMLDWVKKIHQEKKLELLVDKDLKSNYDRIELEEMVQVALLCTQYLPGHRPKMSEVVRMLEGDGLAERWEASQRADTTKCKPPHESSSSDRYSDLTDDSYC 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi243g00017 442 Pfam Leucine rich repeat N-terminal domain 2 33 IPR013210 -
Sebi243g00017 442 MobiDBLite consensus disorder prediction 412 433 - -
Sebi243g00017 442 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 197 412 - -
Sebi243g00017 442 Pfam Protein kinase domain 224 399 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi243g00017 442 Gene3D Transferase(Phosphotransferase) domain 1 206 421 - -
Sebi243g00017 442 SMART serkin_6 192 387 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi243g00017 442 FunFam Somatic embryogenesis receptor-like kinase 1 211 421 - -
Sebi243g00017 442 ProSiteProfiles Protein kinase domain profile. 33 387 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi243g00017 442 SUPERFAMILY Protein kinase-like (PK-like) 218 406 IPR011009 -
Sebi243g00017 442 Gene3D Ribonuclease Inhibitor 1 173 IPR032675 -
Sebi243g00017 442 FunFam Leucine-rich repeat receptor-like protein kinase 1 148 - -
Sebi243g00017 442 SUPERFAMILY L domain-like 2 172 - -
Sebi243g00017 442 Pfam Leucine rich repeat 84 140 IPR001611 GO:0005515
Sebi243g00017 442 ProSitePatterns Serine/Threonine protein kinases active-site signature. 251 263 IPR008271 GO:0004672|GO:0006468
Sebi243g00017 442 MobiDBLite consensus disorder prediction 412 442 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi243g00017 Sebi-Chr243 191293 194203 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi243g00017 203 440 Receptor kinase-like Gene Family AT5G16000 81.481 3.68e-134 398
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Sebi243g00017 Pkinase 1.4e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi243g00017 - - tcc:18602162 423.705