Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi242g00033 ATGCATTGCTATGGCTATGGATTAACAACTGTAACAATCCCATTTCCACCAATGGTAAGTGATTGTCGTTTTTGCTTCTGCCTCCACGCGGCAAATCCCATACCTTTTTCCGGTAACAGATCCGAACCCGTAAAACTCCTGACCCGAAACCGTGCGGGTTCACTCAGGGTGAGAGCTTCGGTTAGTGATGACGTTTTCGTAGCTTCCCGGTCCCAATTGAGCTTCTACGAGCTTCTGGGTGTACCTGAATCCGGGTCATCGGTGGAGGTGAAACACGCGTATAAGCAACTGGCCCGGAAATACCACCCGGATGTGTCGCCACCGGGTCGGGTCGAGGAGTACACGAAGAGGTTTATTATGGTGCAGGAGGCCTACGAGACATTGTCTGATCCAGCAAGGAGAGCTATGTATGATAGAGACATGGCTAATGGGCTTCACCTTGCCTTCTCCTCTCGCAGACGCTATAACTACCGTGGTGTTGATGATCAGTTGTTTCTGAAGTTGATTGCTGACATATTGAGGTTGTCTACTTTATTCTGA 540 0.4926 MHCYGYGLTTVTIPFPPMVSDCRFCFCLHAANPIPFSGNRSEPVKLLTRNRAGSLRVRASVSDDVFVASRSQLSFYELLGVPESGSSVEVKHAYKQLARKYHPDVSPPGRVEEYTKRFIMVQEAYETLSDPARRAMYDRDMANGLHLAFSSRRRYNYRGVDDQLFLKLIADILRLSTLF 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi242g00033 179 Gene3D DnaJ domain 62 160 IPR036869 -
Sebi242g00033 179 ProSitePatterns Nt-dnaJ domain signature. 118 137 IPR018253 -
Sebi242g00033 179 PRINTS DnaJ domain signature 94 109 IPR001623 -
Sebi242g00033 179 PRINTS DnaJ domain signature 76 94 IPR001623 -
Sebi242g00033 179 PRINTS DnaJ domain signature 133 152 IPR001623 -
Sebi242g00033 179 PRINTS DnaJ domain signature 113 133 IPR001623 -
Sebi242g00033 179 SMART dnaj_3 73 133 IPR001623 -
Sebi242g00033 179 Pfam DnaJ domain 75 138 IPR001623 -
Sebi242g00033 179 CDD DnaJ 75 130 IPR001623 -
Sebi242g00033 179 ProSiteProfiles dnaJ domain profile. 74 141 IPR001623 -
Sebi242g00033 179 FunFam Chaperone protein dnaJ 20, chloroplastic 60 164 - -
Sebi242g00033 179 SUPERFAMILY Chaperone J-domain 72 150 IPR036869 -
Sebi242g00033 179 PANTHER CHAPERONE PROTEIN DNAJ 20 CHLOROPLASTIC 56 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi242g00033 Sebi-Chr242 762614 763244 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi242g00033 68 138 C2H2 Transcription Factor Family AT1G74250 41.333 9.49e-09 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi242g00033 - - qsa:O6P43_023570 168.703