Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi242g00031 ATGGCATTCTGTAGTAAGGTTGGAAACCTCTTGAGGCAGAGTGCTCCTCAGAGCAGACAAGTACCTGTTGCATCCATGCTTAATTACATTCGCTCCATGTCTTCATCCAAGCTTTTCATTGGAGGCCTTTCATACGGAGTTGATGACCAGTCTCTTAGAGATGCATTTGCAAGCTTTGGAGATGTGGTTGAGGCAAGGGTTATCACTGATAGAGACACTGGAAGATCAAGGGGATTTGGATTTGTCAACTTCTCCACTGATGAGTCAGCAAGTTCAGCACTATCTGCCATGGATGGACAGGATCTCAATGGGCGAAACATTCGGGTGTCCTATGCAAATGATAGACCTTCTGGACCTCGATCTCCTGGTGGTGGTTATGGTGATGATTCTCGTAGGGGTGGTTGGTGA 408 0.4681 MAFCSKVGNLLRQSAPQSRQVPVASMLNYIRSMSSSKLFIGGLSYGVDDQSLRDAFASFGDVVEARVITDRDTGRSRGFGFVNFSTDESASSALSAMDGQDLNGRNIRVSYANDRPSGPRSPGGGYGDDSRRGGW 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi242g00031 135 SUPERFAMILY RNA-binding domain, RBD 27 133 IPR035979 GO:0003676
Sebi242g00031 135 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 9 129 - -
Sebi242g00031 135 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 38 108 IPR000504 GO:0003723
Sebi242g00031 135 SMART rrm1_1 37 110 IPR000504 GO:0003723
Sebi242g00031 135 MobiDBLite consensus disorder prediction 91 135 - -
Sebi242g00031 135 CDD RRM2_NsCP33_like 37 112 - -
Sebi242g00031 135 Gene3D - 13 135 IPR012677 -
Sebi242g00031 135 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 36 114 IPR000504 GO:0003723
Sebi242g00031 135 FunFam Glycine-rich RNA-binding protein 2 25 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi242g00031 Sebi-Chr242 657977 659008 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi242g00031 35 117 Eukaryotic Initiation Factors Gene Family AT1G49760 43.373 5.12e-15 68.6