Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi242g00023 ATGGTGGAGGATTCATCAACGGACGAGATCGTTTCATGGAGTGCTGAAACCAATAACAGTTTCATCGTTTGGAGCCCCGCTGATTTCTCTCGTATTCTTCTTCCCACCTATTTCAAGCACAACAACTTCTCCAGCTTCATCCGTCAGCTTAATACCTATGGATTTCGAAAAATACATTCTGAGCGATGGGAATTTGCTAATGAAGATTTTGTGAAAGGTCAAAAGCACCTTCTTAAGAATATTCACCGCAAGAAACCTATTCACAGTCACAGTCATCCTCCTTCAGGATCTCATGTGGATCCAGAGAGGTCAGCATTTGAGGAAGAAATCGAGAAACTTTCACATGAGAAAACTACTATTGAATCCAGTATTTCTGGCTTCAAGCAACACCTGTCAGCTGCAAAGCTTCATGTGGAAGATCTACGGCAGCGTTTAGATGGCATGGAGAAGAGGCAGAAGAATTTGCTGAACTTGTTCGAAAGGGCTCTTCAGAATCCTACTTTTATTGAACAAATTTCACAGAAAATTGAGTCCATGGATTTGTTGGGATATAACAAGAAAAGGAGATTGCCTCCGGTTGATCACTTGCAGCCTGTTGCTGAGAATAATTTTGTTGAGAATAATAGCAGTTTTGGAATGGAATCTGGAAACTTTTTCCATCAAGATTTCTCAAATAAACTCAGGCTGGAATTGTCACCAACAGTTTCAGATATCAACTTGGTATCATGTAGTACACATAGTTCAAATGAAGATGGAGAAAGCCTGCAAAAGATGCTATGTGAAGGTGAACCAAAAGAAGTGCAGACAACAAAAGCTCTTGGATTTGCACCTGAACCATTAGAGAATGCAGATATTGGAGCATCTTTTACTCTTGAGATGGATTCATATTTATCAAGAAAATCAACAGCTGCTGAGAGCTCAAAACTGCACTCCTTGGAACCAAATAGTGAGGAAGATGATACTCATATATCCTGCCTTTTAAATCTAACTCTGGCATCTTCTCCATTGCAAGTGAAGAGAGATTCATACGCAGATACATCACCCCAAATAGACTGTCAAGAAATTGGTAAACTGGTAGAATCAAGATTTTATGCCAATGATAAAGAATCCAATGGTGAAGCTTCTTCAAACAGGAATCTGGCTAATGAGGCTACTAATTTAGCTTCCTCACAAGAGGTTCCTAGTAACAACCATGGGACCCCAGCTGCTCCAGTTAGAGTAAATGATGTGTTTTGGGAACAGTTCCTTACAGAAAGACCAGCCTATTCAGACAATGAAGAGTCAATATCCAACTACAAAGCAAATGCCTATGCCAAGCAAGATGAAGGGCAGTCAGTTCATGGAATCTCTGGAAGCATTATGAATATGGATCAGCTCAAACTTTGA 1386 0.4012 MVEDSSTDEIVSWSAETNNSFIVWSPADFSRILLPTYFKHNNFSSFIRQLNTYGFRKIHSERWEFANEDFVKGQKHLLKNIHRKKPIHSHSHPPSGSHVDPERSAFEEEIEKLSHEKTTIESSISGFKQHLSAAKLHVEDLRQRLDGMEKRQKNLLNLFERALQNPTFIEQISQKIESMDLLGYNKKRRLPPVDHLQPVAENNFVENNSSFGMESGNFFHQDFSNKLRLELSPTVSDINLVSCSTHSSNEDGESLQKMLCEGEPKEVQTTKALGFAPEPLENADIGASFTLEMDSYLSRKSTAAESSKLHSLEPNSEEDDTHISCLLNLTLASSPLQVKRDSYADTSPQIDCQEIGKLVESRFYANDKESNGEASSNRNLANEATNLASSQEVPSNNHGTPAAPVRVNDVFWEQFLTERPAYSDNEESISNYKANAYAKQDEGQSVHGISGSIMNMDQLKL 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi242g00023 461 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 1 288 IPR027725 -
Sebi242g00023 461 PRINTS Heat shock factor (HSF) domain signature 46 58 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sebi242g00023 461 PRINTS Heat shock factor (HSF) domain signature 33 45 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sebi242g00023 461 Pfam HSF-type DNA-binding 1 84 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sebi242g00023 461 Coils Coil 131 165 - -
Sebi242g00023 461 Gene3D - 1 85 IPR036388 -
Sebi242g00023 461 SUPERFAMILY "Winged helix" DNA-binding domain 1 84 IPR036390 -
Sebi242g00023 461 ProSitePatterns HSF-type DNA-binding domain signature. 34 58 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sebi242g00023 461 SMART hsfneu3 1 84 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sebi242g00023 461 FunFam Heat stress transcription factor B-4 1 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi242g00023 Sebi-Chr242 498209 501043 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi242g00023 1 461 HSF AT4G13980 49.359 1.53e-139 407
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Sebi242g00023 HSF_DNA-bind 6.2e-27 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi242g00023 K09419 - gmx:100786408 637.876