Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi241g00044 ATGATAGGGAGAACCCCATGCTGTGATGAGAGTGGTTTGAAGAAGGGTCCTTGGACCCCAGAAGAGGATAGAATATTGGTGGATTACATTCAGAAAAATGGCCATGGAAGTTGGAGAGCACTTCCAAAGCTTGCAGGACTCAACAGGTGTGGGAAGAGTTGCAGGCTAAGATGGACTAACTATTTAAGGCCTGATATCAAAAGAGGAAAATTCTCTGAGGAAGAAGAACAACTCATCATCAATTTACATTCAGTTCTTGGGAATAAGTGGTCAGCTATAGCAGGACATTTGCCAGGGAGGACTGATAATGAAATCAAGAACTTTTGGAACACTCATTTAAAGAAAAAGCTTCTTCAAATGGGGTTAGATCCAGTGACTCATCGTCCAAGATTGGATCATCTTAATCTTCTATCCAATCTCCAACAATTGCTAGATGCTACAAACATTGTCAATAGTTTGAGTTTAACAAACACTTGGGACATGAATTCTCTGAGGCTGCAATCAGATGCAACACAATTAGCCAAACTCCAATTGCTGCAGAACATGCTTCAAGTCCTTTCTGGTGCCACTACTCCTAACACAAATTTGGAGTTACTCAATCCATTTGGACCATCATCCTCACAGCTTCAAGAAAATTTTCTGCATGAACTTATGGGATTGAATCAATCTAAGCTCCAAAGCCTTTACAATGGTTCAACTAGTTTTCCTTCTCAAAATCAGCCAAATCTTGAAGCCCTGCTTCATCTGCAGCAGCCAGCTCTGTCCACTGAGCATCATCACATGAATGGTAGTGGCAGCAGCATTAGTAGTTGCATGAAGTCTCAAAAGGTTGATGAGAAACTTAATGCCACAATAATGAATTCTTCATCAACACCATTGGATTCACTTCCAAATCTGGTTTCAGCATCACCTGAATGTTCCAAGGTAAAAGTACCAAATGAGTGTTCCAATCCTTCTTCCACTTCAACCACCTTTGAAATGTGGGGAGATTTCATGTGTGAGGAAGTAAGTGATGCTTATTGGAAAGATCTCATAGACCAAGAGTCTAACCAGTAA 1056 0.4072 MIGRTPCCDESGLKKGPWTPEEDRILVDYIQKNGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSEEEEQLIINLHSVLGNKWSAIAGHLPGRTDNEIKNFWNTHLKKKLLQMGLDPVTHRPRLDHLNLLSNLQQLLDATNIVNSLSLTNTWDMNSLRLQSDATQLAKLQLLQNMLQVLSGATTPNTNLELLNPFGPSSSQLQENFLHELMGLNQSKLQSLYNGSTSFPSQNQPNLEALLHLQQPALSTEHHHMNGSGSSISSCMKSQKVDEKLNATIMNSSSTPLDSLPNLVSASPECSKVKVPNECSNPSSTSTTFEMWGDFMCEEVSDAYWKDLIDQESNQ 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi241g00044 351 FunFam Transcription factor MYB39 70 131 - -
Sebi241g00044 351 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Sebi241g00044 351 FunFam MYB-related transcription factor 14 67 - -
Sebi241g00044 351 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 3 270 - -
Sebi241g00044 351 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Sebi241g00044 351 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Sebi241g00044 351 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Sebi241g00044 351 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Sebi241g00044 351 CDD SANT 70 113 IPR001005 -
Sebi241g00044 351 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Sebi241g00044 351 Gene3D - 70 117 - -
Sebi241g00044 351 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Sebi241g00044 351 Gene3D - 14 67 - -
Sebi241g00044 351 SMART sant 14 64 IPR001005 -
Sebi241g00044 351 SMART sant 67 115 IPR001005 -
Sebi241g00044 351 CDD SANT 17 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi241g00044 Sebi-Chr241 1131314 1132780 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi241g00044 2 346 MYB Transcription Factor Family AT5G16770 50.000 7.26e-104 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Sebi241g00044 Myb_DNA-binding 2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi241g00044 K09422 - gmx:547488 509.99