Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi241g00036 ATGGCGGCGGGGAACTTGAACAATAACAATAATAATATGGTGCCGCCATTTCTGAGCAAGACGTATGAGATGGTGGATGACTCCTCCACCGACTCCATCGTTTCTTGGGGTCACAACAACAACACCTTCGTTGTTTGGAATGTCACTGAATTCGCCAAACACATCTTGCCCAAATATTTCAAGCACAATAACTTCTCCAGCTTTGTCAGGCAGTTGAATACTTACGGTTTTAGAAAGGTTGACCCAGACCGCTGGGAATTTGCAAATGAAGGGTTTCTAAGGGGTCAAAAGCAATTGTTGAAGAGTATCAGTAGGCGAAAATCTACTCATGTAAATGGTACTAGTCAACCACAGCCTCAGGTGCAAAGCTCATCTGTTGGGGCATGTGTTGAAGTTGGCAAGTTTGGGCTTGAGGAAGAGATTGAAAGGCTGAAAAGGGATAAGAATGTTCTTATGCAGGAGCTTGTTAGGTTAAGACAACAGCAACAAACGACTGATAACCAATTGCAAAGTGTCGGGCAACGTGTGCAGACAATGGAGCAGCGTCAGCAACAGATGATGTCTTTCTTGGCGAAGGCCATGCATAGTCCGGGCTTCTTGGCTCAGTTTGTGCAGCAGCAGAATGAAAGCAATAGACACATTACAGGAGGTAAAAAAAGGAGGCTCCACAAGCAGGAAGAAGATAGTTTAGCTACCAAACATCAACATAATTCTCTTGATGGACGGGTTGTCAAGTACCAGCCATCAATAAATGAGGCAGCAAAAGCATTACTTTGCCAGATATTGCAAATGAACAATACTACAAGGAAGGAATCATCAATTAAGAACCCTGATGCATACCTTATAGATGATGTTCCTTCAGCTGTTGCATTAGATAGCAGTAGCTCGTCCACTCGGGTTTCTGGTGTAACGCTTTCTGAGGTTCCACCTATTTCTGGACAATCATGTATGGCAGTAGAATCTCAATTTCCTGTCAGCTGTATGACCAATAGCATATCTGAGGTGCAATCTTCACCTGCTGTGTTGAATGACTGTGTTAATGCAGCTGACTTTCCAGAATTAACAGCACATAATTGCGAAGATAATGCTTTGGATTTTGGTCAAATTCAAGGGATGGGGACAGAGTGCAGCTTCCTGAATCCTGATCAAAATTTTGTGGGGTGTGATACTGGGAACGAGGAGATAGATGTGATATCAAGTGTTTTAGATGGGACACAGTCTGTAGAAGCTGATGCTTTTTCTACTGATGCGGATGGAATTCCTAAACTTCCAGGAATCAATGATGAATTCTGGGAACAGTTTTTTAGGCCAAGCCCACTTACTGGAGATACAGATGAAGTTAAATGCAGCTCTCTGGGATGTGGGTTGACTGAAGACCAGGAATTATCATCAGAAAAGGAGATTCAACAGGAAAAGATGGATAAGAAACAGCGTATTGACCATCTTACACAACAGATGGGACTTCTTGCATCAGAGTCTTAA 1482 0.4291 MAAGNLNNNNNNMVPPFLSKTYEMVDDSSTDSIVSWGHNNNTFVVWNVTEFAKHILPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKQLLKSISRRKSTHVNGTSQPQPQVQSSSVGACVEVGKFGLEEEIERLKRDKNVLMQELVRLRQQQQTTDNQLQSVGQRVQTMEQRQQQMMSFLAKAMHSPGFLAQFVQQQNESNRHITGGKKRRLHKQEEDSLATKHQHNSLDGRVVKYQPSINEAAKALLCQILQMNNTTRKESSIKNPDAYLIDDVPSAVALDSSSSSTRVSGVTLSEVPPISGQSCMAVESQFPVSCMTNSISEVQSSPAVLNDCVNAADFPELTAHNCEDNALDFGQIQGMGTECSFLNPDQNFVGCDTGNEEIDVISSVLDGTQSVEADAFSTDADGIPKLPGINDEFWEQFFRPSPLTGDTDEVKCSSLGCGLTEDQELSSEKEIQQEKMDKKQRIDHLTQQMGLLASES 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi241g00036 493 MobiDBLite consensus disorder prediction 220 235 - -
Sebi241g00036 493 SUPERFAMILY "Winged helix" DNA-binding domain 13 106 IPR036390 -
Sebi241g00036 493 Coils Coil 465 485 - -
Sebi241g00036 493 PRINTS Heat shock factor (HSF) domain signature 68 80 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sebi241g00036 493 PRINTS Heat shock factor (HSF) domain signature 55 67 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sebi241g00036 493 PRINTS Heat shock factor (HSF) domain signature 17 40 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sebi241g00036 493 SMART hsfneu3 13 106 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sebi241g00036 493 Coils Coil 134 161 - -
Sebi241g00036 493 Pfam HSF-type DNA-binding 17 106 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sebi241g00036 493 MobiDBLite consensus disorder prediction 212 235 - -
Sebi241g00036 493 Gene3D - 8 107 IPR036388 -
Sebi241g00036 493 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 11 297 IPR027725 -
Sebi241g00036 493 FunFam Heat shock transcription factor 1 10 107 - -
Sebi241g00036 493 ProSitePatterns HSF-type DNA-binding domain signature. 56 80 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi241g00036 Sebi-Chr241 1033968 1035881 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi241g00036 12 493 HSF AT5G16820 53.213 2.72e-154 446
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Sebi241g00036 HSF_DNA-bind 2.7e-32 CL0123