Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi241g00029 ATGATGTCAGAAGCTACTTCAGTGGACACCCAACAAAGCACAGAGTTCCTTGTGCCCAAAACCACGACGAGGCTAAACCTGTCAAATTCCCAAACTACCCACATCTTTAGATCAAAATTACCAGACATATCCATCCCAAACAACATCCCACTCCACACCTATTGCTTCCAAAAACTCCCCGAAGTCGCCGACCGGCCATGCCTCATCGTCGGCGGCTCCGCCGGCAGAACCTACACCTACGCCGAAACTCACCTCGCATGTCGAAAATTCGCCGCCGGTCTCTCAAATCTCGGCATTAAAAAAGGCGACGTCATCATGATCCTTCTCCCAAACTGTCCCGAGTTCGTCTTCTCCTTCATGGCGGCCTCCATGCTCGGCGCCGTCGCCACCACCGCCAATCCATTCTACACCGCCGCCGAAATCTCAAAGCAACTCACCGCTTCCAAAGCCAAACTCGTCGTCACTCTGTCCACGTACGTCGGGAAGCTTCCCGAAACAGGGGAAGATCTGAAGGCGGTTATCACCGTCGATGCACCGCAGAAGAACTGTTTGAGTTTCTCGGCGGTTTCGGAGGCGTCGGAGGAGAGTGGAGTTCCGGAGGCGGAGATAGCGGCGGAGGATGCGGTGGCGTTGCCGTTCTCGTCAGGGACGACGGGGCTAGCGAAGGGAGTGGTTCTGACGCATAAGAATTTGGTAACGAGCGTGGCTCAGCAAGTTGACGGAGAAAACCCGAACCTGTACATGAGGGAAAACGACGTCGTGCTATGCGTGCTTCCGTTGTTTCACGTATTCTCAATGCACACGGTGATGATGTGTGCGCTGAGAAGAGGGAGCGCGATATTAGTGGTAGAGAAATTTGAGATAGGGGCGTTGATGGAGATGATAGAGAAGCATAAGGTGTCGGTGGCGATGGTGGTGCCGCCGTTGGTGCTGGCTCTCGCTAAGAACCCAAAGGTGGGGGAATATGACCTAACCTCCATACGGTTAGTCATGTCAGGTGCTGCGCCTCTCGGGAAGGAGCTCGAAGATGCTCTCAGCAGCAGGTTTGTCATGATAATGAAGGGGTATGGGATGACAGAGGCTGGGCCGGTGTTGGCCACGTGTTTGGGGTTTGCAAAGGAGCCATTCCCATCGAAGTCAGGGTCGTGTGGCACTGTGGTGAGAAATGCAGAGTTGAAGGTCATTGACCCTGAAACTGGTTCTTCTCTTCCCCGTAACTACCCCGGATACCTGAATGATGAGAAGGCGACTGCAACAACTATTGATGTAGATGGATGGCTTCATACTGGTGATATAGGATACGTAGATGATGATGATGAGATTTTCATCGTTGACAGGGTCAAGGAACTCATCAAATTCAAAGGCTTCCAGGTGCCGCCGGCAGAACTTGAAAACCTTCTTATAAACCACCCTTCCATTGCAGACGCAGCTGTTGTGCCCCAAAAGGATGATGTTGCGGGTGAGGTTCCAGTGGCTTTCGTTGTTAGCTTTGATCTTACTGAAGAGGCTGTAAAGGAGTTTATAGCAAAACAGGTGGTGTTTTACAAAAGACTACACAAAGTGTACTTTGTTCATGCAATTCCAAAGTCTCCATCCGGAAAGATATTAAGAAAAGAACTCAGAGCAAAGCTCGCAAGGATCACCCAGACGGCCTAA 1656 0.5145 MMSEATSVDTQQSTEFLVPKTTTRLNLSNSQTTHIFRSKLPDISIPNNIPLHTYCFQKLPEVADRPCLIVGGSAGRTYTYAETHLACRKFAAGLSNLGIKKGDVIMILLPNCPEFVFSFMAASMLGAVATTANPFYTAAEISKQLTASKAKLVVTLSTYVGKLPETGEDLKAVITVDAPQKNCLSFSAVSEASEESGVPEAEIAAEDAVALPFSSGTTGLAKGVVLTHKNLVTSVAQQVDGENPNLYMRENDVVLCVLPLFHVFSMHTVMMCALRRGSAILVVEKFEIGALMEMIEKHKVSVAMVVPPLVLALAKNPKVGEYDLTSIRLVMSGAAPLGKELEDALSSRFVMIMKGYGMTEAGPVLATCLGFAKEPFPSKSGSCGTVVRNAELKVIDPETGSSLPRNYPGYLNDEKATATTIDVDGWLHTGDIGYVDDDDEIFIVDRVKELIKFKGFQVPPAELENLLINHPSIADAAVVPQKDDVAGEVPVAFVVSFDLTEEAVKEFIAKQVVFYKRLHKVYFVHAIPKSPSGKILRKELRAKLARITQTA 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi241g00029 551 Gene3D - 448 547 IPR045851 -
Sebi241g00029 551 ProSitePatterns Putative AMP-binding domain signature. 211 222 IPR020845 -
Sebi241g00029 551 Pfam AMP-binding enzyme 63 453 IPR000873 -
Sebi241g00029 551 Gene3D - 26 447 IPR042099 -
Sebi241g00029 551 FunFam 4-coumarate--CoA ligase 2 449 547 - -
Sebi241g00029 551 FunFam Long-chain-fatty-acid--CoA ligase FadD 37 448 - -
Sebi241g00029 551 CDD 4CL 45 540 - -
Sebi241g00029 551 Pfam AMP-binding enzyme C-terminal domain 462 534 IPR025110 -
Sebi241g00029 551 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 30 542 - -
Sebi241g00029 551 SUPERFAMILY Acetyl-CoA synthetase-like 30 546 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi241g00029 Sebi-Chr241 841809 844429 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi241g00029 35 479 Monolignol Biosynthesis Gene Families AT3G21240 62.203 0.0 593
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi241g00029 K01904 - gmx:100790396 776.548