Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi241g00026 ATGAGGTTAGGTGGCTACTTTAAGTGGCAGATGAACTTGTGGCTGAATTTGCTGATCCAAGCAATAGTGTTTTGTCCCCTGATCAGGTTTTCTCTCCTTTACATAAACAATTTCAATATTATTTGCTATTCCCAGATTGAAGGTGTAAGAGAAGTATTGTGGACTTATTCTTTGGGGGATGAACATTTGTCATGTCAGCAACAATATGATGAGAAAAACATCCGTCGACGGGTCTATGATGCTCTGAACGTTCTCATGGCAATGGATATTATTTCTAAGGATAAAAAGGAAATACAATGGAAAGGTCTTCCTCGTACTAGTTTGAATGATATTGAAGAACTAAAGACAGAGCGTCTTGGACTCAGAAATAGAATTGAAAAGAAAGCAGCCTATCTGCAGGAGCTTGAGGATCAATTCGTAGGTCTTCAAAATCTTATTCAACGAAATGAGCAATTATATAGCTCAGGAAATCCTCCCAGCGGAGGTGTATCGTTACCGTTTATTCTGGTACAGACACGTCCTCATGCAACTGTTGAAGTGGAAATATCAGAAGATATGCAGCTTGTTCATTTTGATTTCAATAGTACTCCCTTTGAGCTGCATGATGACAATTATGTTCTCAAGGCAATGAAATTTTGTGAGAGACCACAGAGTGATAATATGACACACAATCCTACTGGTGGAGGGGAAGGTTCTAGCATGTCAGGATTGTATCAACCGCAGGTTCCTCCTTCAGGTTCAAACGTGTCAGTTCGGCCTCCCACATCACCTCCGCTCCCTGGAATATTAAAGGCAAGAGTTAAGCAGGAGCATTGA 816 0.4069 MRLGGYFKWQMNLWLNLLIQAIVFCPLIRFSLLYINNFNIICYSQIEGVREVLWTYSLGDEHLSCQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSLNDIEELKTERLGLRNRIEKKAAYLQELEDQFVGLQNLIQRNEQLYSSGNPPSGGVSLPFILVQTRPHATVEVEISEDMQLVHFDFNSTPFELHDDNYVLKAMKFCERPQSDNMTHNPTGGGEGSSMSGLYQPQVPPSGSNVSVRPPTSPPLPGILKARVKQEH 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi241g00026 271 Gene3D - 38 107 IPR036388 -
Sebi241g00026 271 MobiDBLite consensus disorder prediction 216 271 - -
Sebi241g00026 271 Pfam E2F/DP family winged-helix DNA-binding domain 64 102 IPR003316 GO:0005667|GO:0006355
Sebi241g00026 271 Gene3D Transcription factor DP 108 228 IPR038168 -
Sebi241g00026 271 SMART E2F_TDP_2 33 102 IPR003316 GO:0005667|GO:0006355
Sebi241g00026 271 Coils Coil 118 152 - -
Sebi241g00026 271 SUPERFAMILY "Winged helix" DNA-binding domain 56 103 IPR036390 -
Sebi241g00026 271 SUPERFAMILY E2F-DP heterodimerization region 108 224 IPR037241 -
Sebi241g00026 271 PANTHER TRANSCRIPTION FACTOR DP 61 226 IPR015648 GO:0005667|GO:0051726
Sebi241g00026 271 FunFam Transcription factor-like protein DPB 108 232 - -
Sebi241g00026 271 Pfam Transcription factor DP 110 224 IPR014889 -
Sebi241g00026 271 MobiDBLite consensus disorder prediction 217 249 - -
Sebi241g00026 271 CDD DP_DD 107 210 IPR014889 -
Sebi241g00026 271 SMART DP_2 109 269 IPR014889 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi241g00026 Sebi-Chr241 786149 788558 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi241g00026 66 220 E2F-DP Transcription Factor Family AT5G02470 56.129 2.03e-59 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Sebi241g00026 DP 3.6e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi241g00026 K04683 - gmx:100800599 374.785