Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi240g00011 ATGGCTTCGGAGAAGAAACTGTCGAATCCCATGAGGGAAATCAAAGTTCAGAAACTCGTCCTCAACATCTCCGTCGGCGAGAGTGGAGATCGTCTCACCAGAGCTGCGAAGGTCCTTGAACAGCTTAGTGGCCAAACCCCTGTTTTCTCCAAAGCTAGGTACACTGTCCGTTCCTTTGGTATTAGAAGAAATGAAAAGATTGCATGCTATGTCACTGTTAGAGGCGACAAGGCAATGCAGCTTTTGGAGAGTGGGTTGAAGGTGAAGGAATATGAACTTCTGAGGAGAAACTTTAGTGACACTGGTTGTTTTGGCTTTGGTATTCAGGAGCATATTGATTTGGGAATCAAGGGCATATCAGGTGAGAGCATCCTCACGAGAGGAGGTAAATCTGACCATACAATTATGATGGATGGTCATGTGGCTGCTGCAACTGAGATGTTGAGACCACATCATGTGATGTGCTTGGGAAGCTTTGGCTATGACAGTGATGAGTTTCTCAGTTTGGTTTACTGGTATGATCCCTCAACTGGTATTTATGGAATGGATTTCTTTGTTGTTTTGGAGCGCCCTGGATATCGTGTGGGACGTCGTCGCCGGTGCAAGTCTCGTGTGGGAATCCAGCATCGTGTCACAAAGGAGGATGCCATGAAGTGGTTCCAAGTTAAATATGAAGGTGTGATCCTAAACAAGTCCCAGGCAATTGTTTAG 711 0.4599 MASEKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKGISGESILTRGGKSDHTIMMDGHVAAATEMLRPHHVMCLGSFGYDSDEFLSLVYWYDPSTGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQAIV 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi240g00011 236 PANTHER 60S RIBOSOMAL PROTEIN L11-RELATED 2 231 IPR002132 GO:0003735|GO:0005840|GO:0006412
Sebi240g00011 236 Gene3D - 3 130 IPR022803 -
Sebi240g00011 236 Pfam ribosomal L5P family C-terminus 66 120 IPR031309 -
Sebi240g00011 236 SUPERFAMILY RL5-like 169 228 IPR022803 -
Sebi240g00011 236 ProSitePatterns Ribosomal protein L5 signature. 39 55 IPR020929 GO:0003735|GO:0005840|GO:0006412
Sebi240g00011 236 Gene3D - 143 232 IPR022803 -
Sebi240g00011 236 SUPERFAMILY RL5-like 8 117 IPR022803 -
Sebi240g00011 236 Pfam Ribosomal protein L5 9 62 IPR031310 -
Sebi240g00011 236 FunFam 60S ribosomal protein L11 2 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi240g00011 Sebi-Chr240 449334 451231 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi240g00011 1 236 Cytoplasmic Ribosomal Protein Gene Family AT5G45775 72.881 1.82e-116 328
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi240g00011 K02868 - gmx:100818410 312.768