Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi240g00008 ATGAAAGACGAAACAGAGAACATCATCATAGCCGAAAAGAAAGATGAAGATGAAGAACGAGATTTCGAGCTTCCTTTCTTTGATCTTTCTACAATAGCTCATGCCACCAATAACTTCTCAAATGGCAACAAACTTGGAGAAGGAGGTTTTGGACCAGTATATAAGGGTACATTGCCAGATGGACGAGAGATTGCTGTCAAAAGGCTTTCAAGGAGTTCTAAACAAGGATCAAAAGAATTTAAAAATGAAGTTATATTATGTGCAAAACTTCAACATCGAAATCTTGTTAAGGTTCTTGGTTGTTGCATTCAAGGAGATGAGAGAATGCTACTCTATGAATACATGCCCAATAAAAGCTTAGATTCATTTCTTTTGGTTGATCCAGCTCAAAGTAGACTTCTTGACTGGCCCAAGCGCTTTCATATCATGTGTGCAATTTCTCGTGGACTTCTTTATCTTCATCAAGATTCTAGATTAAGGATCATCCATAGAGATCTAAAAGCAAGTAACATTTTATTAGACAATGATATGAATCCAAAAATTTCAGATTTTGGCTTGGCAAAAATTTGTGGAGATGATCAAATTGAAGGGAATACAAACAGAGTAGTTGGGACACATGGTTATATGGCGCCCGAATATGCCATTGATGGGCTATTCTCCATAAAATCCGATGTATTTAGCTTTGGTGTATTATTGCTAGAGATTATAAGTGGAAAGAAAAATAGAGGACTTACTTATCCAAGAAACAATCATAACCTTATTGGGCAAGCATGGAGGTTGTGGAAAGAGGGCAATCAAAAGGAATTCATTGATGATTGCTTAGGAGACTCGTGTATTTTATTTGAAGCCTTACGATGCATACAAATTGCTCTTTTGTGTTTACAATATCATCCAAATGATAGACCAAATATGGCATCTGTGCTTATGATGTTGACCAATGAAACTATTTTAGCTAAACCAAAGGAGCCTCATTTCTTAATAGAAGGGATCTCTATTGAAGGGGAATCTTCTACCACCGAAAAGTTAATGTCTTCATCCATCAATGAAGTAACCATTTCATTATTAGATGTTAGATAA 1077 0.3584 MKDETENIIIAEKKDEDEERDFELPFFDLSTIAHATNNFSNGNKLGEGGFGPVYKGTLPDGREIAVKRLSRSSKQGSKEFKNEVILCAKLQHRNLVKVLGCCIQGDERMLLYEYMPNKSLDSFLLVDPAQSRLLDWPKRFHIMCAISRGLLYLHQDSRLRIIHRDLKASNILLDNDMNPKISDFGLAKICGDDQIEGNTNRVVGTHGYMAPEYAIDGLFSIKSDVFSFGVLLLEIISGKKNRGLTYPRNNHNLIGQAWRLWKEGNQKEFIDDCLGDSCILFEALRCIQIALLCLQYHPNDRPNMASVLMMLTNETILAKPKEPHFLIEGISIEGESSTTEKLMSSSINEVTISLLDVR 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi240g00008 358 SMART serkin_6 39 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi240g00008 358 Pfam Protein tyrosine and serine/threonine kinase 41 309 IPR001245 GO:0004672|GO:0006468
Sebi240g00008 358 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 3 114 - -
Sebi240g00008 358 ProSitePatterns Serine/Threonine protein kinases active-site signature. 161 173 IPR008271 GO:0004672|GO:0006468
Sebi240g00008 358 SUPERFAMILY Protein kinase-like (PK-like) 22 311 IPR011009 -
Sebi240g00008 358 Gene3D Phosphorylase Kinase; domain 1 4 114 - -
Sebi240g00008 358 ProSiteProfiles Protein kinase domain profile. 39 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi240g00008 358 CDD STKc_IRAK 45 313 - -
Sebi240g00008 358 Gene3D Transferase(Phosphotransferase) domain 1 115 322 - -
Sebi240g00008 358 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 115 319 - -
Sebi240g00008 358 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 14 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi240g00008 Sebi-Chr240 337556 338967 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi240g00008 15 358 Receptor kinase-like Gene Family AT4G23150 52.722 1.72e-127 378
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Sebi240g00008 PK_Tyr_Ser-Thr 1.8e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi240g00008 - - tpra:123915417 540.036