Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi23g00228 ATGCCCATGTTATACTATGGCCTAGTAGTGGTGGGAACAGCAGCTATAGTGCTAGCCATATACAACCTTATCATCATCAAACGTTGTAACAGGCACCACACACAATCACAACCTGCAGGGGCTAATAGGTTGCAGGTTGAAGGGGTCCCAGAAAGTAGAAGCTTTGATAACCCACAAAGGAACTTGCTTTCAAGCTTCAAGTACAAGAAGGAAGTGGTAGCAAAAGGGGAAGAGCAAGAACAAGTTGGTGGGTGTGATGGTGGTGAAGATTATGATTATGAATGCCCAGTTTGCTTATCTGTTTATGAAGAAGGGGAAGAGGTGAGGAAATTGCCAAGGTGTAAGCACTCTTTCCATGCTATTTGCATAGACATGTGGCTTTACTCTCACTTTGATTGCCCAATTTGTAGAACACCAGTTGGGCCTTTCTGTCACAATTTTCCGGCAGAGGTTGAATCCGGTGGCATCCCTGTTTGA 477 0.4465 MPMLYYGLVVVGTAAIVLAIYNLIIIKRCNRHHTQSQPAGANRLQVEGVPESRSFDNPQRNLLSSFKYKKEVVAKGEEQEQVGGCDGGEDYDYECPVCLSVYEEGEEVRKLPRCKHSFHAICIDMWLYSHFDCPICRTPVGPFCHNFPAEVESGGIPV 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi23g00228 158 CDD RING-H2_EL5-like 94 137 - -
Sebi23g00228 158 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 8 140 IPR044675 -
Sebi23g00228 158 ProSiteProfiles Zinc finger RING-type profile. 95 137 IPR001841 -
Sebi23g00228 158 FunFam RING-H2 finger protein ATL1 43 142 - -
Sebi23g00228 158 Pfam Ring finger domain 94 137 IPR001841 -
Sebi23g00228 158 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 142 IPR013083 -
Sebi23g00228 158 SUPERFAMILY RING/U-box 94 148 - -
Sebi23g00228 158 SMART ring_2 95 136 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi23g00228 Sebi-Chr23 3023973 3024449 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi23g00228 7 140 C3H Transcription Factor Family AT5G17600 37.037 1.39e-19 82.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi23g00228 - - aprc:113852327 242.662