Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi23g00226 ATGTCGGTGAATCTGACGGCGAACGCGATTCCGGCGATAATTGGCGGCGACGTCAACGCGAAGCCATTGGTTCAGGTTCTGGACATGTCGTTAATCTCCAATAGCAATAACTCGCAGCAGCAGAGATACCGTCTTCTGCTTTCCGACGCCGTTTCGTCCCACCAAGCCATGCTCGCCGCTCAGCTCAACGACCGAGTCCGAACCGGCCGAGTTAAGAAAGATTGTGAGATCATTGGGAATCCGAAGCCATTTGCGGATTCTGATTTACCAGCTCAGAGATCGTTACCTGATAACACTCTGGAGAATTCATCCAGAAGTAGTAATAACAATTTGGCTGCTCAAAATGTTAGTCATAATGTGCAGAATTTCAGACCAACAATTCAACCTCCATACCAACCACCTCCTGTTTACAAAGGCCGTGGGGCAATTGTGAAAAATGAGGCACCAGCACGAGTCATTCCTATAGCTGCTTTAAATCCTTATCAAGGTAGATGGGCCATCAAGGCAAGGGTAACTGCTAAAGGAGATCTCCGCCGTTATAACAATGCTCGCGGAGATGGGAAAGTCTTCTCATTTGATCTTCTTGATTCTGATGGAGGTGAAATACGAGTAACCTGCTTTAATGCTGTTGTTGATCGCTTCTATGATGCAATTGAGGTTGGTAAAGTCTACTTGATATCTAAAGGTAGCTTGAAACCTGCACAGAAGAATTTCAACCATTTGAAAAATGAATGGGAAATTTTTTTGGATTTAAATTCAACGGTCGAGCTTTGCCCTGATGAGGATGCTTCTATACCTAGACAGCAGTTCTCCTTCAGGCCTATCAGTGACATTGAGAGTGTTGACAGTAACTCCATTCTTGATGTTATTGGGGTAGTGACGTCTGTGAATCCTTCAGTTCCCATCTTGAGGAAGAATGGGATGGAGACTCAGAGAAGAATTTTGAATCTAAAAGACAGTTCTGGCAGGAGTGTTGAACTAACACTTTGGGGTGAATTCTGCAACAGGGAAGGACAAAAGCTGCAAGAGATGGTGGATGCTGGGTTTTTCCCCATTTTGGCAGTGAAAGCGGGGAAGGTTAATGACTTTAGTGGAAAGACTATTGGCTCTATCTCTACTACACAGCTTTTCATAAATCCAGATTTCCCTGAAGCTCTTAGCTTAAGAGACTGGTTTGATCGAGTGGGAAAAGATTCTGCTTCTCTATCCATTTCTAAGGACATTATTCCTGGAGGACTGAAGAATGAGACACGCAAAACTGTGTCTCAGATCAAAGATGAAGGCCTGGGGCGGTCAGACAAGCCAGACTGGATAACAGTGAGGGCTACCATTTCCTTCATCAAGACTGATACATTTTGTTACACAGCTTGTCCTCTGATGATTGGAGATCGACAGTGCAATAAGAAAGTGACTAAGTCAGGAAACACAAGATGGCAATGTGATAGATGCAACCAAGAATTTGAGGAGTGTGATTATCGATACCTTCTCCAAGCTCAAATCCTTGATCATACAGGATTAACTTGGGTAACTGCTTTTCAGGAAGCAGGGGAAGAGATTATGGGGTACTCAGCAAAGGAGCTGTACCTGTTGAAGTATGAACAGGAGGATGATGAGAGGTTTGGAGAGATAATCAAGAGTAGACTCTTCAACCAGTTTGTATTTAGGCTGAAAATCAAAGAGGAGTTATATGGCGATGAGCAGAAGGTGAAGATTACAGTAGTCAAGGCAGATAAGGTGAATTATTCTTCGGAGAGTAGATGCATGCTTGATTTGATTTCCAAGTTTTGTAGGCAGTAA 1797 0.4363 MSVNLTANAIPAIIGGDVNAKPLVQVLDMSLISNSNNSQQQRYRLLLSDAVSSHQAMLAAQLNDRVRTGRVKKDCEIIGNPKPFADSDLPAQRSLPDNTLENSSRSSNNNLAAQNVSHNVQNFRPTIQPPYQPPPVYKGRGAIVKNEAPARVIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYDAIEVGKVYLISKGSLKPAQKNFNHLKNEWEIFLDLNSTVELCPDEDASIPRQQFSFRPISDIESVDSNSILDVIGVVTSVNPSVPILRKNGMETQRRILNLKDSSGRSVELTLWGEFCNREGQKLQEMVDAGFFPILAVKAGKVNDFSGKTIGSISTTQLFINPDFPEALSLRDWFDRVGKDSASLSISKDIIPGGLKNETRKTVSQIKDEGLGRSDKPDWITVRATISFIKTDTFCYTACPLMIGDRQCNKKVTKSGNTRWQCDRCNQEFEECDYRYLLQAQILDHTGLTWVTAFQEAGEEIMGYSAKELYLLKYEQEDDERFGEIIKSRLFNQFVFRLKIKEELYGDEQKVKITVVKADKVNYSSESRCMLDLISKFCRQ 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi23g00226 598 SUPERFAMILY Nucleic acid-binding proteins 417 595 IPR012340 -
Sebi23g00226 598 CDD RPA1_DBD_B 286 393 - -
Sebi23g00226 598 Gene3D - 151 261 IPR012340 -
Sebi23g00226 598 NCBIfam replication factor-a protein 1 (rpa1) 76 594 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Sebi23g00226 598 CDD RPA1_DBD_C 421 594 IPR047192 -
Sebi23g00226 598 MobiDBLite consensus disorder prediction 82 109 - -
Sebi23g00226 598 Gene3D - 264 402 IPR012340 -
Sebi23g00226 598 Pfam Replication factor-A C terminal domain 437 586 IPR013955 -
Sebi23g00226 598 SUPERFAMILY Nucleic acid-binding proteins 269 396 IPR012340 -
Sebi23g00226 598 Pfam Replication protein A OB domain 275 379 IPR031657 -
Sebi23g00226 598 FunFam Replication protein A subunit 403 595 - -
Sebi23g00226 598 Gene3D - 3 83 IPR012340 -
Sebi23g00226 598 Pfam Replication factor-A protein 1, N-terminal domain 5 75 IPR007199 GO:0003677|GO:0005634|GO:0006260
Sebi23g00226 598 SUPERFAMILY Nucleic acid-binding proteins 1 75 IPR012340 -
Sebi23g00226 598 CDD RPA1_DBD_A 154 257 - -
Sebi23g00226 598 FunFam Replication protein A subunit 264 402 - -
Sebi23g00226 598 Pfam OB-fold nucleic acid binding domain 166 246 IPR004365 GO:0003676
Sebi23g00226 598 PANTHER REPLICATION FACTOR A 1, RFA1 165 573 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Sebi23g00226 598 MobiDBLite consensus disorder prediction 92 109 - -
Sebi23g00226 598 FunFam Replication protein A subunit 151 260 - -
Sebi23g00226 598 SUPERFAMILY Nucleic acid-binding proteins 152 265 IPR012340 -
Sebi23g00226 598 Gene3D - 408 596 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi23g00226 Sebi-Chr23 2999946 3002262 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi23g00226 26 594 Core DNA Replication Machinery Family AT2G06510 66.667 0.0 847
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi23g00226 K07466 - gmx:100792409 1017.68