Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi23g00202 ATGGCATCTGATTCAAACGAACTTGCTTCCAGCAACACGCTCCAGTCCATATGCTACAAGCGCGGTTCCCTTCAGCTTCTTGATCAGAGAAAGCTTCCTCTAGAAACAATCTACTTGGATATTCGGGATTCAACAGATGGCTGGAATGCCATACGGGATATGGTGGTCCGAGGAGCACCTGCTATTGCAATTGCAGCAGCACTCTCCCTGGCTGTGGAGGTGTCCAATTTAGATGATTTTAATGGATCACCCAGTGATGCTGTTTCCTTACTGCAGAAGAAATTAGACTATCTTGTCTCAAGTCGGCCAACTGCAGTGAACCTATCAGATGCTGCAGCAAAACTCAATGAAGTCATATCTAAGGCTTCTGCTACAACTTCAGAGGCCGGGAGTGTTTTTCAGGCTTATGTGGAGGCTGCTGAAATTATGCTAGAGGATGATGTTGCCTCGAATAGAGCAATTGGTTCTTATGGAGCTAGTTTTATTCGACATCAAACAGAGAAACAGAACCTTTCTGTTTTGACCCATTGCAACACTGGAAGTTTAGCTACGGCTGGATATGGTACTGCTCTGGGTGTAATCCGTGCACTTCACAATGGAGGAGTTTTAGAAAGGGCTTATTGCACAGAAACACGCCCATTCAATCAAGGATCTAGACTTACTGCCTATGAGTTGGTACATGAGAAAATTCCAGCAACTCTTATAGCAGATTCTGCTGTGGCTGCATTAATGAAAGCGGGTCGTGTGGATGCTGTTGTTGTTGGGGCAGATCGTGTTGCATCAAACGGTGACACAGCCAACAAAATTGGAACATATAGTGTTGCCTTATGTGCCAAGTTTCATAATGTACCTTTTTATGTGGCTGCTCCCCTGACCTCCATTGATCTATCACTTTCTTCTGGACAAGAAATTGTCATTGAGGAGAGATCTCCCAAGGAATTGTTGAACTCACGTGGTGGACTTGGTGAGCAGGTTGCTGCCTCAGGGATTTCTGTGTGGAATCCGGCGTTTGATGTTACACCTGCTAATCTAATATCTGGGATCATCACTGAGAAGGTTGGAATCAAAATGCAGAAGAAGTTGCTGTTGCCGTTGAACGACGCCGATGCGAACAAGAAGAAGACGCCATTATACAACAGGGAAGCGTTAGTGAAGCTTCTAAGATGGCATTTTGGTTACCCCGATTTTAGGGGCATGCAATTGAAAGCTATTCAGGCTGTGCTCTCAGGAAGAGATTGTTTTTGTCTCATGCCAACTGGAGGAGGCAAGTCAATGTGTTATCAGATCCCTGCATTGGCAAAAACAGGAATTGTGCTTGTTGTTTGTCCTTTAATAGCCTTAATGGAAAACCAAGTGATGGCACTAAGGGAGAAAGGGATTTCTGCGGAATTTCTTTCCTCAACAAAAACAGCAGATGCAAAAAATAAGATTCATGAGGACCTTGCTTCTGGAAAACCTTCTACAAGGCTGCTATATGTAACTCCAGAACTGATAGCAACACCAGGGTTTATGTCAAAGCTGACAAAGATTTATTCTAGGGGGTTGCTAAGTCTCATTGCCATAGATGAGGCACATTGCATCTCAAGTTGGGGTCATGATTTCAGACCTAGCTATCGTAAGCTTTCATCTTTGAGAAGCCACCTACCAGATGTACCAATATTAGCTCTGACTGCGACTGCTGTTCCTAAGGTTCAGAAGGATGTAGTAGAATCCTTGCATATGCAAAATCCGTTAATACTTAAGTCTTATTTTAATCGTCCTAATATATATTATGAAGTTAGATACAAAGATCTATTGGAAGATGCTTTGGGTGACTTATCTAATACACTCAAATCTAAAGGAGATGTATGTGCAATAGTTTACTGCCTTGAACGTTCAATGTGTGATGAATTGTCAGCTCATCTATCCCAAAGAGGCATTTCTTGTGCTGCTTATCATGCAGGATTGAATAATAAAATGCGAACTTCGGTGTTAGATGATTGGATTTCTTCTAAGATAAGAGTTGTTGTTGCCACTGTAGCTTTTGGAATTCTGGGAGTGCAACCTGTAGTTGCCACTTTCCACCTGCACTTACACTTGAATGCCCTTGAGTTTGATGGCATTGATAGAAAGGATGTCAGAATTGTGTGCCACTTCAATATTCCGAAATCAATGGAAGCATTCTATCAAGAGTCAGGCAGAGCAGGTCGTGATCAATTACCCTCTACAAGTCTATTGTACTATGGGGTAGATGATCGCAAGAGGATGGAATTTATATTAAGCAACTCAGGGAACAAGAAGTCACAATTATCAAGTTCACAGGAAGAATCAACCAGAATGTCCCTGACTGCATTCAACCAGATGGTTGAATATTGTGAAGGATCTGGATGCCGTAGGAAAAGGATTCTTGAGAGTTTTGGGGAGCAGGTAACTGCATCACTATGTGGAAAAACATGTGACACCTGTAGACATCCAAATTTAGTTGCCAGATACTTGGAGGATCTCACAACTGTCTGTGCTCTGCGCCAGAAAAATGGTTCTTCTCGAGTTTTTATGACCAGTTCCACTGACGTAATCAATGGAGAACTGTTGTCTGAATTCTGGAATCGGGATGAGGATGCAAATGGATCAGAGGAAGATATTTCTAACTCTGATGATGGTAATGATGTTGTCAACAACCTAACCCGGTCAAAGCTTCAATCCAGATTGGGAGTAAATGAAAAGCTGGCTTTGTTACAACGGGCAGAAGAAAACTTCTATCGAAATGAGAACACTGAAAAACAGAGCAAGAAAGTTGACAAGAATGGTATTTCGGATACAATGCGAGGAGCAAGCAGGCAAAGATTGCAAAATGCTCTAAAACAGGCTCAGCAACGGCTTGACAACTTCAAGATTGAAGTGGAAACCTCAGCATCTTTTCTCGAAGATGAATGTTACAAGAAATATGGCAAAGCTGGAAAATCATTCTATTATTCACAAGTGGCAAGTACTGTAAGGTGGCTGACAACTACAAGCTCTATTGATCTGATGAACCGACTTTGTGCAATTAATGCCTCCACATCGACGAATGTCTTGTCTGAAGCTGAACATCCCTTAACACGGCCACCTGCTTTAGATCCTTGTGCACAAGAAGATACTGGCAATGAACTCTCAGGCGATGCTAGATCAGAAAACCCATGTGGTGTGCCAATGGAAAGCTCTTCTTTTAATATAAAGTTACCACAAATACCATCCTTCTCTGAATTCGTAAATAGTAGGAAAGCAAAAGGGGACCAACTCAATGACACGAAAAGGCATTCATCTAGAGTAGAAAAGAAGATGAGGATACAGTAG 3312 0.4227 MASDSNELASSNTLQSICYKRGSLQLLDQRKLPLETIYLDIRDSTDGWNAIRDMVVRGAPAIAIAAALSLAVEVSNLDDFNGSPSDAVSLLQKKLDYLVSSRPTAVNLSDAAAKLNEVISKASATTSEAGSVFQAYVEAAEIMLEDDVASNRAIGSYGASFIRHQTEKQNLSVLTHCNTGSLATAGYGTALGVIRALHNGGVLERAYCTETRPFNQGSRLTAYELVHEKIPATLIADSAVAALMKAGRVDAVVVGADRVASNGDTANKIGTYSVALCAKFHNVPFYVAAPLTSIDLSLSSGQEIVIEERSPKELLNSRGGLGEQVAASGISVWNPAFDVTPANLISGIITEKVGIKMQKKLLLPLNDADANKKKTPLYNREALVKLLRWHFGYPDFRGMQLKAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKTGIVLVVCPLIALMENQVMALREKGISAEFLSSTKTADAKNKIHEDLASGKPSTRLLYVTPELIATPGFMSKLTKIYSRGLLSLIAIDEAHCISSWGHDFRPSYRKLSSLRSHLPDVPILALTATAVPKVQKDVVESLHMQNPLILKSYFNRPNIYYEVRYKDLLEDALGDLSNTLKSKGDVCAIVYCLERSMCDELSAHLSQRGISCAAYHAGLNNKMRTSVLDDWISSKIRVVVATVAFGILGVQPVVATFHLHLHLNALEFDGIDRKDVRIVCHFNIPKSMEAFYQESGRAGRDQLPSTSLLYYGVDDRKRMEFILSNSGNKKSQLSSSQEESTRMSLTAFNQMVEYCEGSGCRRKRILESFGEQVTASLCGKTCDTCRHPNLVARYLEDLTTVCALRQKNGSSRVFMTSSTDVINGELLSEFWNRDEDANGSEEDISNSDDGNDVVNNLTRSKLQSRLGVNEKLALLQRAEENFYRNENTEKQSKKVDKNGISDTMRGASRQRLQNALKQAQQRLDNFKIEVETSASFLEDECYKKYGKAGKSFYYSQVASTVRWLTTTSSIDLMNRLCAINASTSTNVLSEAEHPLTRPPALDPCAQEDTGNELSGDARSENPCGVPMESSSFNIKLPQIPSFSEFVNSRKAKGDQLNDTKRHSSRVEKKMRIQ 1103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi23g00202 1103 SMART ultradead3 392 594 IPR014001 -
Sebi23g00202 1103 CDD SF2_C_RecQ 586 741 - -
Sebi23g00202 1103 PANTHER METHYLTHIORIBOSE-1-PHOSPHATE ISOMERASE 11 358 - -
Sebi23g00202 1103 SUPERFAMILY NagB/RpiA/CoA transferase-like 12 352 IPR037171 -
Sebi23g00202 1103 Gene3D - 204 360 IPR042529 -
Sebi23g00202 1103 MobiDBLite consensus disorder prediction 1019 1056 - -
Sebi23g00202 1103 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 436 752 IPR027417 -
Sebi23g00202 1103 Coils Coil 939 959 - -
Sebi23g00202 1103 Gene3D - 12 203 IPR027363 -
Sebi23g00202 1103 CDD DEXHc_RecQ 385 585 - -
Sebi23g00202 1103 NCBIfam S-methyl-5-thioribose-1-phosphate isomerase 42 352 IPR011559 GO:0044249
Sebi23g00202 1103 SMART helicmild6 629 732 IPR001650 -
Sebi23g00202 1103 FunFam RecQ family DNA helicase 586 833 - -
Sebi23g00202 1103 Pfam Initiation factor 2 subunit family 56 352 IPR000649 GO:0044237
Sebi23g00202 1103 FunFam ATP-dependent DNA helicase 377 585 - -
Sebi23g00202 1103 Hamap Putative methylthioribose-1-phosphate isomerase [mtnA]. 14 358 IPR005251 -
Sebi23g00202 1103 FunFam Methylthioribose-1-phosphate isomerase 12 203 - -
Sebi23g00202 1103 Pfam Helicase conserved C-terminal domain 608 730 IPR001650 -
Sebi23g00202 1103 NCBIfam RecQ family ATP-dependent DNA helicase 386 680 IPR004589 GO:0004386|GO:0006310
Sebi23g00202 1103 Gene3D - 361 585 IPR027417 -
Sebi23g00202 1103 FunFam Methylthioribose-1-phosphate isomerase 169 364 - -
Sebi23g00202 1103 MobiDBLite consensus disorder prediction 1081 1103 - -
Sebi23g00202 1103 NCBIfam S-methyl-5-thioribose-1-phosphate isomerase 15 352 IPR005251 -
Sebi23g00202 1103 Gene3D - 586 833 IPR027417 -
Sebi23g00202 1103 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 404 578 IPR014001 -
Sebi23g00202 1103 MobiDBLite consensus disorder prediction 1077 1103 - -
Sebi23g00202 1103 Pfam DEAD/DEAH box helicase 399 565 IPR011545 GO:0003676|GO:0005524
Sebi23g00202 1103 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 609 771 IPR001650 -
Sebi23g00202 1103 Pfam RecQ zinc-binding 745 816 IPR032284 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi23g00202 Sebi-Chr23 2587741 2602520 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi23g00202 53 352 Eukaryotic Initiation Factors Gene Family AT2G05830 79.070 1.59e-154 461
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi23g00202 K10901 - gmx:100819601 1201.81