Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi23g00197 ATGGCTTTATCAATTTCCTCCACTGCATTGTCAAGTTTTCCAAACATAGAAATACGCCAAAAGGTTTTCCCTGAAAGAACAGCCACATACACATGCTTGAGCAGAAGAATCTTTACAAATGCAACAAAAGGAGTCTCAGATGTCTGTGAGCCACTTCCTCCAGATAGGCCTTTGTGGTTCCCTGGTAGTTCACCTCCTCCATGGCTTGATGGCAGTCTTCCTGGTGATTTCGGATTTGACCCACTTGGATTAGGGTCTGATCCAGAGTTGCTTAAATGGTTTGCTCAGGCTGAACTAATGCATGGTAGATGGGCAATGCTTGCTGTGTCTGGAATTCTGATTCCAGAATTGCTTGAAAGGATGGGTTATGTTGAGAACTTCTCTTGGTATGAAGCTGGTACTCGAGAGTACTTTGCAGATCCCACAACCTTGTTCATTGTACAATTGGCCTTGATGGGTTGGGTGGAGGGTAGAAGATGGGCTGATTTGATTAACCCAGGGAGTGTTGATATTGAGCCCAAGTTTCCAAATAGGCCCAACCCAAAGCCAGATGTTGGTTACCCAGGTGGGTTGTGGTTTGACCCCTTGATGTGGGGAAGAGGGTCACCAGAGCCTGTCATGGTGTTAAGGACTAAGGAGATCAAGAATGGTAGACTTGCAATGTTGGCTTTTGTTGGCTTCTGGTTCCAAGCTATTTATACTGGACAAGACCCCATTGAAAATTTGATGGCACACCTTGCAGATCCTGGTCACTGCAACATTTTCTCGGGAAGAAGAACCACCACCTTAATCTCTCCGAGGAGCAGCGCTTCCTTAAAGAAAGTTTGGCTCTCTGGTAACAAATTCTCCGGTAACATACCCGTTTCCTTAACCGAACTTGACCTCCTCAAAGAGTTACATCTCGAGTATAATGAGTTTTCAGGGCCTATTCCTAATCTCAATCAAGAGTTTACATCGTTTGATGTGTCCAACAACAAATTAGAAGGTCCAATCCCAGAAAAGTTGTCCAAGTTTGATGCTGTTTCGTTTTCAGGAAATGAAGGACTTTGTGGGAAAACCAATGGGGGTGGTTATGGTTCTAGTTGGGCGGTGAAGGTGATTGTGATACTCGTTTTGGCGGTTCTTGCGGCGGTGATTTTCCTCTTCGTGAAGTCGAGGCAACGGCGTGATGATGATTTCAGCGTGGTGAGTAGGGATAGTAGTGTGGATGAGATGGTGCAAGTGCATGTGCCTAGTAGCAGGGGATCCTCTGTTTCTTCTTCGAATGCTTCTTATCAACCGGTTGGAAGAAAGGGGGGTGATTCTTCTTCTAAGAGAGGAGGGGCTACGAGGGGTGGGGTTGGGGACCTTGTGATGGTGAATGAGGAAAAGGGGGCGTTTGGTTTGCAGGATTTGATGAAGGCTGCTGCAGAGGTTCTGGGGAATGGTGCTTTGGGATCTGCTTATAAAGCTTCCATGGCGAATGGGTTGTGTGTGGTGGTGAAGAGGATGAGGGAGATGAATAAGATAGGGAGAGATGTGTTTGATGCTGATATGAGACAGTTTGGGAGGATCAGACATAGTAATGTTTTGACTCCTTTGGCTTACCATTACCGCAAGGAGGAGAAGCTTTTTATCACAGAGTACATGCCCAAAGGAAGCTTGTTGTATGTCTTGCATGGTGATAGAGGAACCTTCCATTCTGAGCTGAATTGGCCTACCCGTTTGAAGATTGTTAAGGGAATGGCAAGAGGGTTGGGCTTCCTTTATACAGAGTTTTCTACCTATGACCTGCCCCATGGAAACCTTAAGTCTTGCAATGTTCTACTAACTGATGATTATGAGCCTCTATTAAGTGACTATGCTTTTCAACCACTAATCAACCCCAGTGTTGCAGTGCAGGCAATATTTGCCTATAAAACCCCAGATTATGTACAGTGCCAGAGAGTTACACAGAAGACTGATGTTTACTGCCTTGGAATCATCATTCTCGAAATCATGACAGGGAAATTCCCATCTCAGTATCACAGCAATGGTAAAGGTGGGACTGATGTTGTGCAATGGGTGCTCACAGCAATTTCTGAAGGAAGAGAAGGAGAATTGATTGATCAAGAGTTGAAAAACAACACAAGTTCACTCAATCAGATGCTACAAATTCTCCAAATTGGGGCTGCTTGCACAGAAAGCAACCCTGACCAAAGGCTAAACATGAAGGAAGCCATTAGAAGGATAGAGGAAGTGAGAATTGCAGGCCTTGGAAATGGAAAATATCACAGTTCAGCATGCATGCTCGGTCATTTTCATGAAAGATCTTCTGAGAGCATAGTGAGTGATGTTGTGGTTGTGCAAGAGAAAGGCACACACAGGGCAGAGAAGAAAAAGGGAGAGATATATAGCTTCATAAAGCAGTTCCGTTTATGA 2400 0.4487 MALSISSTALSSFPNIEIRQKVFPERTATYTCLSRRIFTNATKGVSDVCEPLPPDRPLWFPGSSPPPWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHGRWAMLAVSGILIPELLERMGYVENFSWYEAGTREYFADPTTLFIVQLALMGWVEGRRWADLINPGSVDIEPKFPNRPNPKPDVGYPGGLWFDPLMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFWFQAIYTGQDPIENLMAHLADPGHCNIFSGRRTTTLISPRSSASLKKVWLSGNKFSGNIPVSLTELDLLKELHLEYNEFSGPIPNLNQEFTSFDVSNNKLEGPIPEKLSKFDAVSFSGNEGLCGKTNGGGYGSSWAVKVIVILVLAVLAAVIFLFVKSRQRRDDDFSVVSRDSSVDEMVQVHVPSSRGSSVSSSNASYQPVGRKGGDSSSKRGGATRGGVGDLVMVNEEKGAFGLQDLMKAAAEVLGNGALGSAYKASMANGLCVVVKRMREMNKIGRDVFDADMRQFGRIRHSNVLTPLAYHYRKEEKLFITEYMPKGSLLYVLHGDRGTFHSELNWPTRLKIVKGMARGLGFLYTEFSTYDLPHGNLKSCNVLLTDDYEPLLSDYAFQPLINPSVAVQAIFAYKTPDYVQCQRVTQKTDVYCLGIIILEIMTGKFPSQYHSNGKGGTDVVQWVLTAISEGREGELIDQELKNNTSSLNQMLQILQIGAACTESNPDQRLNMKEAIRRIEEVRIAGLGNGKYHSSACMLGHFHERSSESIVSDVVVVQEKGTHRAEKKKGEIYSFIKQFRL 799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi23g00197 799 FunFam Chlorophyll a-b binding protein, chloroplastic 66 251 - -
Sebi23g00197 799 Pfam Chlorophyll A-B binding protein 65 231 IPR022796 -
Sebi23g00197 799 MobiDBLite consensus disorder prediction 409 443 - -
Sebi23g00197 799 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 270 741 IPR046959 -
Sebi23g00197 799 Gene3D Phosphorylase Kinase; domain 1 444 542 - -
Sebi23g00197 799 Gene3D Ribonuclease Inhibitor 250 355 IPR032675 -
Sebi23g00197 799 MobiDBLite consensus disorder prediction 409 431 - -
Sebi23g00197 799 Gene3D Chlorophyll a/b binding protein domain 66 249 - -
Sebi23g00197 799 ProSiteProfiles Protein kinase domain profile. 467 742 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi23g00197 799 Gene3D Transferase(Phosphotransferase) domain 1 543 745 - -
Sebi23g00197 799 Pfam Protein kinase domain 471 735 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi23g00197 799 SUPERFAMILY Chlorophyll a-b binding protein 55 256 - -
Sebi23g00197 799 SUPERFAMILY L domain-like 270 338 - -
Sebi23g00197 799 SUPERFAMILY Protein kinase-like (PK-like) 471 737 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi23g00197 Sebi-Chr23 2524765 2529397 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi23g00197 253 742 Receptor kinase-like Gene Family AT3G42880 52.317 7.22e-179 526
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Sebi23g00197 Pkinase 1.1e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi23g00197 - - gmx:100788667 635.18