Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi23g00190 ATGCATGCCATGATGGGTTTGCTTCCATTTTCAATGGTTCTATTTCTCTATTTGACCATTGTTCATTCTGTAGTTTATGGGGAGGAAAACGATACCCTAGTGAATGAAAAAAAATCACTTCTTTCATTCATGTCAGGCATTGTTTCTGACCCCAAAAACGTTCTAGAGAGTTGGAAGTCACCTGGTGTTCATGTTTGCAATTGGTATGGTGTCAGATGCAATAATACAATTGATAGGATCATAGAGCTTGATCTTAATGGAAGCTTACTTGGGGGCACCATTTCCCCTGCTCTTGCCAACCTCTCTTTTTTGGAAATTCTTGATCTTTCTCAGAATTTTTTTGTGGGTCACATTCCAAAAGAACTGGGCTATTTAATTCACCTTCGACAACTCAGTTTATCTTGGAATTTTCTTGAAGGGAAAATTCCCTCTGAGTTGGGGTCACTTCATAATTTGTACTACCTTAACATGGGAAGTAATCAGCTGGAAGGTGATATTCCACCATCACTTTTCTGCAATGGGTCTTCCTCATTGAGGTATATAGACCTCTCTAACAACTCCTTGGGGGGACAAATACCCTTGAACAATGAGTGTATCCTCAAAGAGCTTAGGTTCCTCTTACTTTGGTCTAACAAGCTTGTAGGCCAAGTTCCCTTAGCTCTTTCAAACTCCACACAACTTAAATGGCTTGATTTAGAGTCAAATATGTTGAGTGGGGTGCTACCATCTGAGGCTGTAAGTAATTGGCCACAATTACAATTCCTTTACCTATCAAATAATGACTTTGTTAGCCATGATGGTAACACCAACCTTGAACCTTTCTTTTCTTCCTTGATGAATTTGTCTAACATTCAAGTACTGGAGTTGGCGGGAAACAATCTTGGAGGGAAGCTACCTCATACCATTGGTGATCTTCCTACCAGCTTGTTGCAGCTTCACCTAGATGACAATCTCATATATGGTTCTATACCTCCAAACATTGGCAACCTTTTCAATCTGACTCTCCTAAATTTTTCTAGTAACTTGCTAAATGGATCAATACCTCCAAGCCTCTGCCAGATGGGTAGGCTAGAGAGGATTTATTTGTCAAATAATTCACTATTTGGGGAGATTCCTTCAACCCTTGGTGGCATTAAGCATCTGGGACTTCTTGACTTGTCAAGAAACAAGCTTTCTGGTTCAATACCAGACAGTTTTGCTAACCTCTCCCAATTAAGAAAGCTTTTACTTTATGACAACCAGCTTTCTGGAACCATCCCTCCAAGTCTTGGAAAATGTGTCAATTTGGAGATTTTGGACCTATCCCACAACAAGATTTCAGGGATGATCCCTAAACAAGTTGCAGCCTTGGCTAGCCTCAAACTGTACTTGAATTTATCAAGCAATAACTTATATGGGCCTTTACCATTAGAGCTCTCCAAAATGGACATGGTGCTAGCTATTGATCTTTCCATGAACAATCTCTCTGGCAGAATCCCACCACAGCTTGAGAGTTGCATAGCTCTAGAGTACCTTAACCTTTCTGGTAACTCCTTAGAAGGCCCTCTCCCAGATTCATTAGGCCAATCGCCTTATATTCAAGCACTTGATGTGTCTTCAAATCAATTGACTGGGGTAATACCACAGTCCCTTCAGTTGTCCTCCACACTCAAGAAACTAAATTTCTCTTACAATAAATTCTCAGGGAGTGTCTCAAGCAAGGGGAGTTTTTCCTCTTTGACCATAGATTCTTTCCTAGGGAATGATGGTCTCTGTGGCTCAGTAAAAGGCATGCAAAACTGCCACAAGAAACAGAGATATCATTTGGTTCTCTTGTTAATTCCAGTGCTACTATTTGCCACACCCCTGCTGTGCATGTTTGGGTACCCCACAAAAATTAAGTCAAAATTCAAAAAACAATTGACAATAGTTAGCAGAAGGGAATCAGAGGATGAAGATGAGGAAACACAAGAGCTCAAGTACCCAAGAATTTCATATAGAAAACTCATTGAAGCCACTGGAGGATTCAGTTCTTCAAGCCTAATTGGTTCAGGTCAGTTTGGAAAGGTCTACAAAGGAATTCTCCAAGATAATACAAGAATAGCTGTGAAGGTATTAAACACACCAACAGCTGGAGAGATTTCAGGAAGCTTTAAAAGGGAATGCCAAATCCTGAAAAGGACTAGGCACAGAAATTTAATGAGGATAATCACAATTTGCAGCAAAAAAGAGTTCAAGGCTCTTGTTCTTCCACTGATGCCAAATGGTAGCCTTGAGAGGCACTTATATCCAAGCCATGGGTTAAGCCAGAGGCTGCATATGGTTCAGTTAGTGAGGATTTGCAGTGATGTGGCTGAGGGAATGGCTTATCTACACCACTATTCTCCAGTTAGAGTAGTGCACTGTGATCTTAAACCAAGCAATATACTACTTGATGATGATTTTACAGCTTTGGTAACTGATTTTGGTATTGCAAGGCTTGTCAAAGGTGATGAGAACATGCCCTCTAGTGACTCAACAACATCTTTCAGCTCAACACATGGTCTATTATGTGGCTCTGTTGGTTACATAGCCCCTGAGTATGGAATGGGAAAACATACTTCAACTAAGGGTGATGTTTACAGTTTTGGAGTACTTGTTCTAGAAATGGTGACAGGTAGACGCCCAACAGATGTCCTTATCCATGAAGGCTCTAGCTTGCATGAATGGGTTAAGAGACAATATCCACACAAGCTTGATAACATTGTTAAACAAGCATTGCAAAGGTGCTTTCCTTCTGCCATGTCAACTCACTGTCACAAAATTGGGAAAGATGTTATATTGGAACTCATTGAATTGGGGCTTCTGTGCACAAACCAGAACCCTTCAACAAGACCAAGCATGCTGGATGTGGCCCAAGAAATAGGGAGGTTGAAGGACTACCTCTCTAATAAATCTTCTCTGATTCAAGAAGTCAATGCTATGGTTAATTCTTTCCCCAGGGAAGATAAATTTAGTTGGAAAACAAATAATTAA 2994 0.4048 MHAMMGLLPFSMVLFLYLTIVHSVVYGEENDTLVNEKKSLLSFMSGIVSDPKNVLESWKSPGVHVCNWYGVRCNNTIDRIIELDLNGSLLGGTISPALANLSFLEILDLSQNFFVGHIPKELGYLIHLRQLSLSWNFLEGKIPSELGSLHNLYYLNMGSNQLEGDIPPSLFCNGSSSLRYIDLSNNSLGGQIPLNNECILKELRFLLLWSNKLVGQVPLALSNSTQLKWLDLESNMLSGVLPSEAVSNWPQLQFLYLSNNDFVSHDGNTNLEPFFSSLMNLSNIQVLELAGNNLGGKLPHTIGDLPTSLLQLHLDDNLIYGSIPPNIGNLFNLTLLNFSSNLLNGSIPPSLCQMGRLERIYLSNNSLFGEIPSTLGGIKHLGLLDLSRNKLSGSIPDSFANLSQLRKLLLYDNQLSGTIPPSLGKCVNLEILDLSHNKISGMIPKQVAALASLKLYLNLSSNNLYGPLPLELSKMDMVLAIDLSMNNLSGRIPPQLESCIALEYLNLSGNSLEGPLPDSLGQSPYIQALDVSSNQLTGVIPQSLQLSSTLKKLNFSYNKFSGSVSSKGSFSSLTIDSFLGNDGLCGSVKGMQNCHKKQRYHLVLLLIPVLLFATPLLCMFGYPTKIKSKFKKQLTIVSRRESEDEDEETQELKYPRISYRKLIEATGGFSSSSLIGSGQFGKVYKGILQDNTRIAVKVLNTPTAGEISGSFKRECQILKRTRHRNLMRIITICSKKEFKALVLPLMPNGSLERHLYPSHGLSQRLHMVQLVRICSDVAEGMAYLHHYSPVRVVHCDLKPSNILLDDDFTALVTDFGIARLVKGDENMPSSDSTTSFSSTHGLLCGSVGYIAPEYGMGKHTSTKGDVYSFGVLVLEMVTGRRPTDVLIHEGSSLHEWVKRQYPHKLDNIVKQALQRCFPSAMSTHCHKIGKDVILELIELGLLCTNQNPSTRPSMLDVAQEIGRLKDYLSNKSSLIQEVNAMVNSFPREDKFSWKTNN 997
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi23g00190 997 Gene3D Phosphorylase Kinase; domain 1 629 744 - -
Sebi23g00190 997 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 367 598 - -
Sebi23g00190 997 ProSitePatterns Serine/Threonine protein kinases active-site signature. 792 804 IPR008271 GO:0004672|GO:0006468
Sebi23g00190 997 PANTHER RECEPTOR-LIKE PROTEIN 55 321 962 - -
Sebi23g00190 997 Gene3D Ribonuclease Inhibitor 371 476 IPR032675 -
Sebi23g00190 997 SMART LRR_typ_2 378 401 IPR003591 -
Sebi23g00190 997 SMART LRR_typ_2 427 450 IPR003591 -
Sebi23g00190 997 SMART LRR_typ_2 281 305 IPR003591 -
Sebi23g00190 997 SMART LRR_typ_2 149 173 IPR003591 -
Sebi23g00190 997 SMART LRR_typ_2 330 354 IPR003591 -
Sebi23g00190 997 SMART LRR_typ_2 402 426 IPR003591 -
Sebi23g00190 997 SMART LRR_typ_2 101 125 IPR003591 -
Sebi23g00190 997 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 746 973 - -
Sebi23g00190 997 Gene3D Transferase(Phosphotransferase) domain 1 746 985 - -
Sebi23g00190 997 ProSiteProfiles Protein kinase domain profile. 669 968 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi23g00190 997 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 649 745 - -
Sebi23g00190 997 ProSiteProfiles Leucine-rich repeat profile. 428 449 IPR001611 GO:0005515
Sebi23g00190 997 SUPERFAMILY L domain-like 332 586 - -
Sebi23g00190 997 Gene3D Ribonuclease Inhibitor 33 196 IPR032675 -
Sebi23g00190 997 Gene3D Ribonuclease Inhibitor 269 370 IPR032675 -
Sebi23g00190 997 Gene3D Ribonuclease Inhibitor 477 587 IPR032675 -
Sebi23g00190 997 ProSitePatterns Protein kinases ATP-binding region signature. 675 697 IPR017441 GO:0005524
Sebi23g00190 997 FunFam Leucine-rich repeat receptor-like protein kinase 33 194 - -
Sebi23g00190 997 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 275 366 - -
Sebi23g00190 997 SUPERFAMILY L domain-like 37 265 - -
Sebi23g00190 997 CDD STKc_IRAK 675 964 - -
Sebi23g00190 997 SUPERFAMILY Protein kinase-like (PK-like) 649 959 IPR011009 -
Sebi23g00190 997 Pfam Leucine rich repeat N-terminal domain 36 74 IPR013210 -
Sebi23g00190 997 Pfam Leucine Rich Repeat 502 520 IPR001611 GO:0005515
Sebi23g00190 997 Pfam Leucine Rich Repeat 127 149 IPR001611 GO:0005515
Sebi23g00190 997 Pfam Leucine rich repeat 202 262 IPR001611 GO:0005515
Sebi23g00190 997 Pfam Leucine rich repeat 373 415 IPR001611 GO:0005515
Sebi23g00190 997 SMART serkin_6 669 968 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi23g00190 997 Gene3D Ribonuclease Inhibitor 197 268 IPR032675 -
Sebi23g00190 997 Pfam Protein kinase domain 671 959 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi23g00190 Sebi-Chr23 2443240 2446499 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi23g00190 36 966 Receptor kinase-like Gene Family AT3G47570 35.471 4.39e-164 506
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Sebi23g00190 Pkinase 2e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi23g00190 - - qsa:O6P43_022222 1394.79