Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi23g00187 ATGCAGTACACCGCTATTAAGCCTCTGGGTGACAGGGTACTGATTAAAATTAAGGAAGCAGAAGAGAAGACCGAGGGTGGGATTTTGCTTCCCACAACTGCTCAAACAAAGCCTCAAGGGGGTGAGGTCGTTGCTGTTGGAGAAGGAAAGACAGTTGGGAAGAGTAACGTGGAAATTAGTGTGAAGACTGGCGCACAAGTTGTGTATTCCAAGTATGCAGGTACTGAGGTGGACTTCAATGGTACAAAGCATCTTATTCTGAAGGATGATGACATTGTTGGTATCCTTGAAACTGATGACATCAAGGATCTTAAACCCTTGAATGATAGAGTCCTCATAAAGGTTGCAGAAGCTGAGGAAAAAACTGCAGGCGGTTTGTTGCTTACAGAGGCAACCAAAGAGAAACCTTCAATTGGAACAGTGATAGCAGTTGGTCCTGGGCATCTGGACGAGGAAGGCAATAGAAAACCTTTGACCGTTGCTGCTGGGAACACAGTTTTGTACTCCAAATACGCTGGGAATGACTTCAAGGGCAAAGATGGTTCTGACTACATTACCTTGAGGAGCTCAGATGTCATGGCTGTCCTCTCTTAG 594 0.4545 MQYTAIKPLGDRVLIKIKEAEEKTEGGILLPTTAQTKPQGGEVVAVGEGKTVGKSNVEISVKTGAQVVYSKYAGTEVDFNGTKHLILKDDDIVGILETDDIKDLKPLNDRVLIKVAEAEEKTAGGLLLTEATKEKPSIGTVIAVGPGHLDEEGNRKPLTVAAGNTVLYSKYAGNDFKGKDGSDYITLRSSDVMAVLS 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi23g00187 197 ProSitePatterns Chaperonins cpn10 signature. 6 30 IPR018369 GO:0005524|GO:0006457
Sebi23g00187 197 FunFam 10 kDa chaperonin 102 197 - -
Sebi23g00187 197 SUPERFAMILY GroES-like 103 196 IPR011032 -
Sebi23g00187 197 CDD cpn10 6 96 IPR020818 GO:0005524|GO:0006457|GO:0044183
Sebi23g00187 197 ProSitePatterns Chaperonins cpn10 signature. 104 128 IPR018369 GO:0005524|GO:0006457
Sebi23g00187 197 Hamap Co-chaperonin GroES [groES]. 103 197 IPR020818 GO:0005524|GO:0006457|GO:0044183
Sebi23g00187 197 Pfam Chaperonin 10 Kd subunit 104 195 IPR020818 GO:0005524|GO:0006457|GO:0044183
Sebi23g00187 197 Pfam Chaperonin 10 Kd subunit 6 95 IPR020818 GO:0005524|GO:0006457|GO:0044183
Sebi23g00187 197 PRINTS 10kDa chaperonin signature 6 21 IPR020818 GO:0005524|GO:0006457|GO:0044183
Sebi23g00187 197 PRINTS 10kDa chaperonin signature 83 96 IPR020818 GO:0005524|GO:0006457|GO:0044183
Sebi23g00187 197 PRINTS 10kDa chaperonin signature 62 74 IPR020818 GO:0005524|GO:0006457|GO:0044183
Sebi23g00187 197 PRINTS 10kDa chaperonin signature 28 49 IPR020818 GO:0005524|GO:0006457|GO:0044183
Sebi23g00187 197 FunFam 20 kDa chaperonin, chloroplastic 1 98 - -
Sebi23g00187 197 PANTHER 10 KDA HEAT SHOCK PROTEIN 102 195 IPR020818 GO:0005524|GO:0006457|GO:0044183
Sebi23g00187 197 SMART Cpn10_2 5 96 IPR020818 GO:0005524|GO:0006457|GO:0044183
Sebi23g00187 197 SMART Cpn10_2 103 196 IPR020818 GO:0005524|GO:0006457|GO:0044183
Sebi23g00187 197 Gene3D GroES chaperonin 99 197 IPR037124 GO:0006457
Sebi23g00187 197 Gene3D GroES chaperonin 1 98 IPR037124 GO:0006457
Sebi23g00187 197 SUPERFAMILY GroES-like 4 97 IPR011032 -
Sebi23g00187 197 CDD cpn10 104 196 IPR020818 GO:0005524|GO:0006457|GO:0044183
Sebi23g00187 197 Hamap Co-chaperonin GroES [groES]. 5 97 IPR020818 GO:0005524|GO:0006457|GO:0044183
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi23g00187 Sebi-Chr23 2398011 2399274 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi23g00187 2 197 Calmodulin-binding Proteins AT5G20720 82.143 3.42e-117 331