Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi23g00186 ATGCCTGTGCCTATAACAGGGGAAAGGAAGACCATCAATTCAGAGTTATGGCATGCTTGTGCTGGACCGTTGGTTTCATTACCTCCTGTTGGAAGTCTTGTGGTTTACTTCCCTCAAGGACACAGTGAACAAGTTGCAGCATCCATGCAAAAGGAGGCTGACTTTATACCAAGTTATCCTAACCTTCCATCCAAGTTGATTTGCATTCTTCACAATGTTGCCCTGCATGCTGATCCTGAAACTGATGAGGTTTATGCACAGATGACCCTTCAGCCAGTAAATAAATATGACAAGGAAGCAATGATGGCATCAGACATGAGTCTCAAACAAAGCCAACAACCTACGGAATTCTTTTGCAAAACTCTTACAGCTAGTGACACAAGCACTCATGGTGGATTTTCTGTACCTCGTAGAGCAGCTGAGAAAATATTTCCCCCTCTGGATTTTTCCATGCAACCTCCAGCTCAGGAGATTGTTGCCAAAGATTTGCATGACACCACATGGACATTTAGGCATATTTATCGTGGACAACCAAAGAGGCATCTATTGACTACTGGTTGGAGTGTCTTTGTTAGCACAAAAAGGCTATTTGCTGGAGATTCAGTTCTTTTCATCAGAGATGAAAAACAGCAACTTCTTTTAGGTATAAAGAGAGCTAATAGACAGCAGCCAGCACTATCTTCATCAGTAATATCCAGTGACAGCATGCATATTGGCATTCTTGCTGCTGCAGCTCATGCTGCTTCAAATAACAGCCCGTTCACTATATTTTATAATCCAAGGGCCAGCCCCTCTGAATTTGTAATTCCAATCGCCAAGTATAATAAATCCTTGTTCACTCAAGTATCACTTGGAATGAGATTCAGAATGATGTTTGAGACTGAGGAGTCAGGTGTACGCAGATATATGGGTACAATCACTGGGATCAGTGACTTGGATCCTGTCAGATGGAAAAATTCACAATGGCGCAATCTTCAGGTTGGATGGGATGAATCAACTGCTGGTGAGCGCCCAAGTAGAGTTTCAATTTGGGATATTGAGCCAGTAGTGACTCCTTTCTACATTTGTCCACCTCCATTTTTTAGGCCCAAGTTCCCCAAGCAACCAGGAATGCCAGAAGATGAGTCTGATATAGAAAATGCTTTCAAGAGAGCCATGCCTTGGCTTGGAGATGACCTGGGAATGAAGGATGCCTCAAATTCAATCTTTCCCGGTTTGAGTTTAGTGCAATGGATGAGCATGCAGCAGAATAATCAGTTCTCTGCTGCACAATCAGGGTTTCTGCCTCCATCCATGCTTTCATCTAATACACTGCATGGTAATCTTAACACTGATGATCCATCCAAGTTATTGAGCTTTCAAAACCCCGTCCTTTCTGCACCAAGTCTTCAATTTAACAAACCTAATTTACCAAACCAAGTGAATCACTTGCAACAGCCCCCAACGTCGTGGCCTCAGCAGCAGCAGCAGCAACAGCAGAAGCTGCAGTCATTATTGCAAACGCCATTAAACCAGCTCCAGCAGCAGCAGCAAAGGCAACAACAACTGCCTGGACCACAAAACCTGCCACAGGCACAGCAACAACCCCAACTTCCTCAGCAGAGAGCACAGCAGCCACAACAACAGCAACAGTCTAGTCAACACACCATTATGAATAATGGAACAGTTCCTTCTAGCCAGATACCAAATCAGTGTGTACAGCAACCAGTATCCTATTCTCATCTTCAGCAACAGCAATTACTCTCAGGAAGTATCTCACCCCAACAAAGTTTCCAATCGGCTGGTAAGAATACAATGCTAATGACATCCTTACCACAAGACTCACAATTTCAGCAACAGATAGACCAGCAAGCTACTCTCTTACAGAGGCAGCAGCAGCAACAGACACAGTTGCAACAATCTCCATTGCAGTTATTGCAACAAAGCATGTCACAAAGGGCATCACAGCAACCACAAATGACTCAAATGTCACCGCAAAACAGCTCAGAGCAGCAACCACAGTTACAGTTGCTACAGAAATTGCAACAGCAGCAGCAGCAACTCCTGTCCACATCTAGCTCAAATTTGCAGTCTCAGCTTCTGCAGCAACAAAATACTCACCAACAAAACCAGCAACTGCCACAGTTGCCTCTATCTCAGCATCAGCCTCAACAGCTTGGCAACAATGCATTCTCAATGGACAGGCTTCTCAACAACAACTTCTCTTTTTCAGCTCTTATGCAATCACAGCAGCATCCTGTAAGCCAACCCCAGCATACACAGAAATCGCCAACTTATACTAGAGCTCCCTCTACTCTTACAGATGCAGATGCCCCATCATGCTCAACTTCTCCATCTACTAATAATTGCCAGATGTCTCCTCCAAACCTCCTGAAAAGAAATCAACAAGTAACAGTCACATTAGGAGGGACTTTGATAGTTGAACCAACCAATAATTTAATACAGGAGCTTCAGACTAAGTCTGATATGCAGATCAAACATGAATTAGCCAATGTAAAAGGACCTGACAAGCTAAAGTATAAAGGGACAATTACTGATCAGCTGGAAGTTTCTTCTGGAACACCTTACTGTATTGATCCTGGTAATATCCACCAGAACTTCCCACTTCCCAACTTCTGCATGGATGCGGATGTCCAATCACACGCAAGAAATAATCTACCATTTGCCTCCAATCTCGATGGATTAACACCTGATACTTTGCTATCAAGGGGGTATGACTCTCAAAAAGATCTTCAAAACTTGCTGTCTAATTATGGTGGTGGTCCAAGAGACATTGAAACTGAGCTGTCCACTGCTGCCATTAGTCCACAGTCATTTGGGGTGCCAAATTTGCCTTTTAAACCAGGATGCTCAAGTGATATTGCCATCAATGATACTGGGGTTTTGAATAATGGCTTGTGGGCTAATCAAACACAACGAATGCGAACATATACTAAGGTTCAAAAATGTGGCTCTGTTGGAAGATGTATTGATGTCACCCGATACAAGGGATATGATGAACTTCGGCATGATTTGGCTCGTATGTTTGGGATTGAAGGGCAGCTAGAAGATCCTCTAAGGACTGAGTGGAAACTAGTATATGTGGATCATGAAAACGACATTCTTCTTGTTGGTGATGACCCTTGGGAAGAATTTGTAAGCTGTGTCCAGAGCATAAAGATATTGTCATCTGCTGAGGTACAACAACTGAGCTTGGATGGGGATTTAGGTCATGTTCCAATCCCCAATCAAGCTTGTAGTGGGACAGAAAATGGCAATGCATGGAGAGGACAGTATGATGATAACTCTGCAGCCTCATTCAATAGATAA 3309 0.434 MPVPITGERKTINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMQKEADFIPSYPNLPSKLICILHNVALHADPETDEVYAQMTLQPVNKYDKEAMMASDMSLKQSQQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQEIVAKDLHDTTWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKQQLLLGIKRANRQQPALSSSVISSDSMHIGILAAAAHAASNNSPFTIFYNPRASPSEFVIPIAKYNKSLFTQVSLGMRFRMMFETEESGVRRYMGTITGISDLDPVRWKNSQWRNLQVGWDESTAGERPSRVSIWDIEPVVTPFYICPPPFFRPKFPKQPGMPEDESDIENAFKRAMPWLGDDLGMKDASNSIFPGLSLVQWMSMQQNNQFSAAQSGFLPPSMLSSNTLHGNLNTDDPSKLLSFQNPVLSAPSLQFNKPNLPNQVNHLQQPPTSWPQQQQQQQQKLQSLLQTPLNQLQQQQQRQQQLPGPQNLPQAQQQPQLPQQRAQQPQQQQQSSQHTIMNNGTVPSSQIPNQCVQQPVSYSHLQQQQLLSGSISPQQSFQSAGKNTMLMTSLPQDSQFQQQIDQQATLLQRQQQQQTQLQQSPLQLLQQSMSQRASQQPQMTQMSPQNSSEQQPQLQLLQKLQQQQQQLLSTSSSNLQSQLLQQQNTHQQNQQLPQLPLSQHQPQQLGNNAFSMDRLLNNNFSFSALMQSQQHPVSQPQHTQKSPTYTRAPSTLTDADAPSCSTSPSTNNCQMSPPNLLKRNQQVTVTLGGTLIVEPTNNLIQELQTKSDMQIKHELANVKGPDKLKYKGTITDQLEVSSGTPYCIDPGNIHQNFPLPNFCMDADVQSHARNNLPFASNLDGLTPDTLLSRGYDSQKDLQNLLSNYGGGPRDIETELSTAAISPQSFGVPNLPFKPGCSSDIAINDTGVLNNGLWANQTQRMRTYTKVQKCGSVGRCIDVTRYKGYDELRHDLARMFGIEGQLEDPLRTEWKLVYVDHENDILLVGDDPWEEFVSCVQSIKILSSAEVQQLSLDGDLGHVPIPNQACSGTENGNAWRGQYDDNSAASFNR 1102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi23g00186 1102 MobiDBLite consensus disorder prediction 1080 1102 - -
Sebi23g00186 1102 MobiDBLite consensus disorder prediction 741 789 - -
Sebi23g00186 1102 FunFam Auxin response factor 970 1064 - -
Sebi23g00186 1102 ProSiteProfiles PB1 domain profile. 975 1068 IPR000270 GO:0005515
Sebi23g00186 1102 SUPERFAMILY CAD & PB1 domains 989 1053 - -
Sebi23g00186 1102 SUPERFAMILY DNA-binding pseudobarrel domain 107 247 IPR015300 -
Sebi23g00186 1102 Pfam Auxin response factor 244 326 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Sebi23g00186 1102 ProSiteProfiles B3 DNA-binding domain profile. 118 220 IPR003340 GO:0003677
Sebi23g00186 1102 Pfam B3 DNA binding domain 118 219 IPR003340 GO:0003677
Sebi23g00186 1102 SMART B3_2 118 220 IPR003340 GO:0003677
Sebi23g00186 1102 CDD B3_DNA 117 209 IPR003340 GO:0003677
Sebi23g00186 1102 Gene3D - 970 1064 - -
Sebi23g00186 1102 FunFam Auxin response factor 281 353 - -
Sebi23g00186 1102 MobiDBLite consensus disorder prediction 633 671 - -
Sebi23g00186 1102 Gene3D - 115 219 IPR015300 -
Sebi23g00186 1102 Gene3D - 281 352 - -
Sebi23g00186 1102 Pfam AUX/IAA family 972 1063 IPR033389 -
Sebi23g00186 1102 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 8 678 IPR044835 GO:0003677|GO:0006355|GO:0009725
Sebi23g00186 1102 MobiDBLite consensus disorder prediction 462 562 - -
Sebi23g00186 1102 FunFam Auxin response factor 116 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi23g00186 Sebi-Chr23 2385798 2391970 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi23g00186 1 479 B3 DNA Binding Superfamily AT1G19220 82.046 0.0 811
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Sebi23g00186 AUX_IAA 2.7e-09 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi23g00186 K14486 - gmx:100815277 1577.38