Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi23g00167 ATGAGAACACAAGAGTTGGCAATAATCTTTTTAGTGTTAGGATGTGCACTGACGCAGGTCTCCATGTCAGAAGCAGTCTTAGGTGGTCACCCAAAGCATGATCACTATGAATGCAATTTTACAAGATATCCTAATCTTTGTGCTGAAACGTTGAGGGTCAGTGGATTAGGTTCTGGGAATCAAAATGTTGATATCATTCAGACCCTTGTTAACAAAACCATATTTGAAACCAACTTGCCAACTTCATATTTTGCTGAATTCAAGACTCAGGATGCTCAACAAACACATTCTGTCGCAGACTACTGTGAAGAGTTAATGAGCATGTCACTCAAAAGGCTGGACCAATCCTTGAAAGCACTAAAATCCCCGACAAGAAACAAGAATGACATCCAAACATGGCTAAGTGCTTCTCTAACTTTCCAACAAGCTTGTAAAGACCATGTAGATGCACACACCTCTAAACTCTCTATAGCAGATGATGACCTCATCATGGATAGAATGTCTAAGAAGATGGACTATCTTTCTAAACTAGGAAGCAACTCATTAGCACTTGTTAATAGGATCACCAACAATGCAAAGAGTGGTAATGAAAAGGAACATGAATCATTTCCAGAGTGGGTATCTTCCAAAGGAAGAAAACTCCTTCAGGGAGCCAGTACCATAAAAGCAAATGTCATAGTGGCACAAGATGGTACAGGAAACTACAAGACAGTTTCTGAAGCCATTGAAGTAGCTCCAGGGACACGGTTTGTGATTTATGTTAAGGCAGGGATTTATAAGGAGAAGATTCGTGTTAAGAAGGATGCAATAACAGGAGATGGATTTATTGCACGAGATATTGGTTTCCACAACAATGCTGGACCACGAGGTGAACAAGCCGTGGCATTGCTCATTTCTTCTGATCGTTCAGTACTCTATAGATGCAGCATAGTAGGATACCAAGATACCCTCTATGCACTTTCACTTCGCCAATTCTACAAAGAATGTGACATCTATGGCACCATAGACTTTATCTTTGGTAACGCAGCTGCAGTTTTCCAAAGCTGCAACTTGGTGCTTCGTCACCCATATGGTAAAGGCTACAATGTCATTCTAGCCAATGGAAGAACAGACCCGGGACAGAACACTGGTTTCTCTGTTCATAAGTGTGTCATAACAACAAGCTCAGATTTTTCTCATGTGAAACATTCCTATAGTTCTTTTCTTGGGAGGCCTTGGAAGGAGTATTCTAGGTCTGTGGTGATGGAATCAACTATAGATGATGCTATTGCAGGTAGGGGTTGGATTGAGTGGCCTGGTTATGGAAGCTCTGTGTTGAAAACTCTGTATTATGCAGAGTATGCTAATGAAGGCCCTGGTGCTGGAACTGCCAAGAGGGTTCAATGGCCTGGTTTTCATGTTGTTGGAGCTGAAGAGGCTGCAAAGTTCACTGTTGCTAATTTCATTGGTGGAAGTTCATGGATTCCCTCAAGTGAGGTCACTTTCCTTTCAGGACTTAACTGA 1503 0.4172 MRTQELAIIFLVLGCALTQVSMSEAVLGGHPKHDHYECNFTRYPNLCAETLRVSGLGSGNQNVDIIQTLVNKTIFETNLPTSYFAEFKTQDAQQTHSVADYCEELMSMSLKRLDQSLKALKSPTRNKNDIQTWLSASLTFQQACKDHVDAHTSKLSIADDDLIMDRMSKKMDYLSKLGSNSLALVNRITNNAKSGNEKEHESFPEWVSSKGRKLLQGASTIKANVIVAQDGTGNYKTVSEAIEVAPGTRFVIYVKAGIYKEKIRVKKDAITGDGFIARDIGFHNNAGPRGEQAVALLISSDRSVLYRCSIVGYQDTLYALSLRQFYKECDIYGTIDFIFGNAAAVFQSCNLVLRHPYGKGYNVILANGRTDPGQNTGFSVHKCVITTSSDFSHVKHSYSSFLGRPWKEYSRSVVMESTIDDAIAGRGWIEWPGYGSSVLKTLYYAEYANEGPGAGTAKRVQWPGFHVVGAEEAAKFTVANFIGGSSWIPSSEVTFLSGLN 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi23g00167 500 PANTHER PECTINESTERASE 22 489 - -
Sebi23g00167 500 ProSitePatterns Pectinesterase signature 1. 246 265 IPR018040 -
Sebi23g00167 500 Gene3D Invertase/pectin methylesterase inhibitor family protein 35 190 IPR035513 -
Sebi23g00167 500 Pfam Pectinesterase 224 268 IPR000070 GO:0030599|GO:0042545
Sebi23g00167 500 Pfam Pectinesterase 269 484 IPR000070 GO:0030599|GO:0042545
Sebi23g00167 500 FunFam Pectinesterase 4 267 499 - -
Sebi23g00167 500 CDD PMEI-like_3 38 190 - -
Sebi23g00167 500 Pfam Plant invertase/pectin methylesterase inhibitor 38 184 IPR006501 GO:0004857
Sebi23g00167 500 Gene3D - 271 499 IPR012334 -
Sebi23g00167 500 Gene3D - 217 270 IPR012334 -
Sebi23g00167 500 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 38 189 IPR035513 -
Sebi23g00167 500 NCBIfam pectinesterase inhibitor domain 8 186 IPR006501 GO:0004857
Sebi23g00167 500 FunFam Pectinesterase 31 189 - -
Sebi23g00167 500 SUPERFAMILY Pectin lyase-like 219 497 IPR011050 -
Sebi23g00167 500 SMART PMEI_2 30 184 IPR006501 GO:0004857
Sebi23g00167 500 ProSitePatterns Pectinesterase signature 2. 331 340 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi23g00167 Sebi-Chr23 2108915 2111801 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi23g00167 38 500 Carbohydrate Esterase AT3G49220 41.199 7.16e-119 361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi23g00167 K01051 - gmx:100795439 741.495