Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi23g00164 ATGGCTCTTTCTTCAACACTAACACCCACTATCACACTCATCTTCTCCTTGGTGTTGTTTCTAGGCCTGTGCACGCCATGGGGTGCTGCTGCTCCCACTGACATTGTGGGATTAGAGTGCTTGAAGGTTGCTCCTTCTGAATTCGCTGGGTCAGTGAGAACTGTCGTTGGCATTTTGCAAGATGTTATCTCTATTCTCTCAGAGTTCGGCAATGGCTTCGGCGATTTTCGTCTCTCTAATGCCATTTCTGATTGCCTCGATTTGCTTGATCTCTCCTCTGATGAACTTGACTGGTCTGTCTCCGCTACACAGACTCCCAAAGGGAAGCATAACAGTACTGGGAAGTTGAGTTCTGATTTGAGGACATGGTTAAGTGCTGCACTTGCGAATCCAGAGACATGCATGGATGGATTTGAAGGTACAAATGGCATGGTGAAGGGTCTAGTATCCACTGGCCTTGGTCAAATGATGTCGTTGTTGAAGGAGCTTCTCACCCAGGTGGACCCTGTTTCAGATCACTTCATGGGGCAGAGTAAGGGTGAATTTCCTTGGTGGGTTAAACCAGGGGAAAGGAAGCTGCTGCAGGAAAATGGGGTGCGTGTGGATGCTGTTGTGGCTGCTGATGGGAGTGGGAACTATACTAAGGTGATGGATGCGGTGTTGGCAGCACCTGATTATAGCATGGAACGCTATGTGATACATATTAAGAGGGGTGTTTACAATGAGAATGTTGAGATCAAGAAGAAGAAATGGAACCTCATGATGATTGGAGATGGCATGGATGCTACAGTTATCTCCGGTAACCGGAGTTTCATCGACGGTTGGACCACATTCCGATCAGCTACCTTTGCTGTTAGTGGTAGAGGGTTCATAGCACGAGACATCACCTTCCAGAACACTGCAGGGCCCGAGAAGCACCAAGCAGTGGCTCTAAGATCTGACTCTGACCTCTCTGTATTCTACCGATGTGGGATCTTTGGTTACCAAGACAGCCTCTATACCCATACCATGCGCCAATTCTACAGAGAATGCAAAATCACTGGCACTGTGGATTTCATCTTTGGAGATGCCACTGCTCTTTTCCAAAACTGCCAAATAATGGCTAAGAAAGGGTTACCAAATCAAAAGAACACCATCACAGCTCATGGGAGAAAAGACCCTGATGAACCAACTGGTTTCTCCATCCAATTCTGCAACATCTCTGCTGATTCTGACCTTCTTACCTCAGTTAATTCCACTCAGACATACCTTGGAAGACCATGGAAACCATATTCTAGAACAATTTTCATGCAATCTTACATTAGTGATGTGTTAAGGCCAGAAGGGTGGTTAGAGTGGAATGGGGATTTTGCTTTGGACACATTGTATTATGCAGAGTACATGAATTATGGGCCAGGAGCAGGACTTAATAAGCGAGTTAAATGGCCAGGGTATCATGTGATGAATGATTCTAGTCAAGCTAGTAACTTTACGGTGACCCAATTTATTGAGGGGAATCTGTGGTTACCTTCAACAGGTGTAACGTTCACTGCTGGATTGGGAGTTTAA 1548 0.4587 MALSSTLTPTITLIFSLVLFLGLCTPWGAAAPTDIVGLECLKVAPSEFAGSVRTVVGILQDVISILSEFGNGFGDFRLSNAISDCLDLLDLSSDELDWSVSATQTPKGKHNSTGKLSSDLRTWLSAALANPETCMDGFEGTNGMVKGLVSTGLGQMMSLLKELLTQVDPVSDHFMGQSKGEFPWWVKPGERKLLQENGVRVDAVVAADGSGNYTKVMDAVLAAPDYSMERYVIHIKRGVYNENVEIKKKKWNLMMIGDGMDATVISGNRSFIDGWTTFRSATFAVSGRGFIARDITFQNTAGPEKHQAVALRSDSDLSVFYRCGIFGYQDSLYTHTMRQFYRECKITGTVDFIFGDATALFQNCQIMAKKGLPNQKNTITAHGRKDPDEPTGFSIQFCNISADSDLLTSVNSTQTYLGRPWKPYSRTIFMQSYISDVLRPEGWLEWNGDFALDTLYYAEYMNYGPGAGLNKRVKWPGYHVMNDSSQASNFTVTQFIEGNLWLPSTGVTFTAGLGV 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi23g00164 515 ProSitePatterns Pectinesterase signature 1. 227 246 IPR018040 -
Sebi23g00164 515 CDD PMEI-like_4 10 167 - -
Sebi23g00164 515 FunFam Pectinesterase 28 169 - -
Sebi23g00164 515 SUPERFAMILY Pectin lyase-like 200 512 IPR011050 -
Sebi23g00164 515 FunFam Pectinesterase 196 513 - -
Sebi23g00164 515 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 58 156 IPR035513 -
Sebi23g00164 515 Gene3D - 197 513 IPR012334 -
Sebi23g00164 515 SMART PMEI_2 31 170 IPR006501 GO:0004857
Sebi23g00164 515 ProSitePatterns Pectinesterase signature 2. 346 355 IPR033131 -
Sebi23g00164 515 Pfam Plant invertase/pectin methylesterase inhibitor 80 150 IPR006501 GO:0004857
Sebi23g00164 515 Gene3D Invertase/pectin methylesterase inhibitor family protein 48 167 IPR035513 -
Sebi23g00164 515 PANTHER PECTINESTERASE 79 503 - -
Sebi23g00164 515 Pfam Pectinesterase 202 499 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi23g00164 Sebi-Chr23 2086624 2090464 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi23g00164 12 513 Carbohydrate Esterase AT3G43270 65.310 0.0 726
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi23g00164 K01051 - gmx:100777500 867.455