Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi23g00145 ATGGCATCTGATCTAAATTCGGGGTTGTCCAAGAAAACATTTGTTTTTGGATTGAAAATATGGGTATTAATGGGAATAATAGTTGGTTTGTTCATTATAGTCATTCTTGTGGTGCTATCAATATGTCTTACTTTAAGAAAAAAGTCCAGAAGAGTCAATGGCAAGCTTCCGCTCAGCAATATCTTATCTGTTTCAGAAGAGATCAAAGAAATTAGAGTTGATCAAGTTTCATCAAATAATCATTCGCAAAACGGTGCTTTTATGAGTCTGAATGATAGATTTGGTGATAGTGAGTCTGAAAAGGTTTTGATGCAAACAAAGAACAGGGATAATAGCAGTCAATCAGGCTCATTTAACCACTTAGAGAAAGATGCAAATGGCTCTCAATCAGGTGAAGAAAGTGGTCCCAAGAGCACTTATGCTCACAGGTCTTCTTCGCATCCTATAACTGCACCATCCCCTTTGTCTGGTCTGCCTGAATTCTCTCACCTTGGCTGGGGCCACTGGTTTACATTAAGGGACCTAGAACTTGCAACGAACAGATTCTCAAAAGACAATGTTATTGGTGAAGGTGGTTATGGAATTGTTTATCGAGGACAAGCTGAAAAGGAATTTAGGGTGGAAGTTGAGGCTATTGGTCACGTGCGGCATAAGAACTTGGTGAGACTTTTGGGCTATTGTATTGAAGGCACTCACAGGTTATTGGTTTATGAGTATGTTAACAATGGCAATTTAGAGCAGTGGCTTCACGGCGCCATGCGGCAGCATGGCTTCCTTACTTGGGAAGCTCGGATGAAAATTGTCCTTGGAACAGCCAAAGCGCTGGCTTACTTGCATGAGGCAATTGAGCCAAAAGTTGTAAATTTGGTTGACTGGCTCAAGATGATGGTAGGGTGTAGGCGCTCAGAAGAGGTGGTAGACCCCAACATTGAGACCAGACCATCAACAAGTGCCCTTAAACGAGCCCTTTTGACTGCTTTGAGGTGTGTTGATCCAGATTCTGAAAAAAGACCAAGGATGAGCCAAGTTGTCCGCATGCTTGAATCGGAGGAATATCCCATACCTCGAGAGGATCGAAGAAGGCGAAGAAGTCAGGCTGGAAACATAGAGCTAGAGACTCAGAGGGAGACTTCTGATACAGATAAGAGTGACAATCCAGATTATAAGCCAAATGGCAGAAGGAACCAACACATGTAG 1197 0.4261 MASDLNSGLSKKTFVFGLKIWVLMGIIVGLFIIVILVVLSICLTLRKKSRRVNGKLPLSNILSVSEEIKEIRVDQVSSNNHSQNGAFMSLNDRFGDSESEKVLMQTKNRDNSSQSGSFNHLEKDANGSQSGEESGPKSTYAHRSSSHPITAPSPLSGLPEFSHLGWGHWFTLRDLELATNRFSKDNVIGEGGYGIVYRGQAEKEFRVEVEAIGHVRHKNLVRLLGYCIEGTHRLLVYEYVNNGNLEQWLHGAMRQHGFLTWEARMKIVLGTAKALAYLHEAIEPKVVNLVDWLKMMVGCRRSEEVVDPNIETRPSTSALKRALLTALRCVDPDSEKRPRMSQVVRMLESEEYPIPREDRRRRRSQAGNIELETQRETSDTDKSDNPDYKPNGRRNQHM 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi23g00145 398 Gene3D Phosphorylase Kinase; domain 1 159 201 - -
Sebi23g00145 398 Pfam Protein tyrosine and serine/threonine kinase 200 280 IPR001245 GO:0004672|GO:0006468
Sebi23g00145 398 PANTHER OS01G0323000 PROTEIN 4 287 - -
Sebi23g00145 398 Gene3D Phosphorylase Kinase; domain 1 202 240 - -
Sebi23g00145 398 ProSiteProfiles Protein kinase domain profile. 182 398 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi23g00145 398 MobiDBLite consensus disorder prediction 106 152 - -
Sebi23g00145 398 MobiDBLite consensus disorder prediction 354 398 - -
Sebi23g00145 398 Gene3D Transferase(Phosphotransferase) domain 1 287 366 - -
Sebi23g00145 398 MobiDBLite consensus disorder prediction 101 153 - -
Sebi23g00145 398 Gene3D Transferase(Phosphotransferase) domain 1 241 286 - -
Sebi23g00145 398 SUPERFAMILY Protein kinase-like (PK-like) 156 283 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi23g00145 Sebi-Chr23 1894177 1897358 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi23g00145 17 288 Strubbelig Receptor Gene Family AT4G22130 32.776 7.72e-33 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Sebi23g00145 PK_Tyr_Ser-Thr 5.8e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi23g00145 - - gmx:732653 490.345