Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi23g00140 ATGGAAGCTAAATTTGAGGGGAAAAATCAGTATCTGTATGGACCAGTGGTGCCAGAAATGAAGAGTGTTGGGAAGAGAAGTTTGGAATGGGATTTGAATGATTGGAAATGGGATGGAGATCTTTTTACTGCTAGGCAACTAAATTCAGTGCCATCAGATTGTGGGAGTCGTCAGCTGTTCCCAGTTGATCCTGAAATACCTGCAAATGCTGATATTTCAAACAATTTGACTTCTGGCTGGGATGATATCAACCCTGGGGAAGAAAAGAGAGAATTGGAGAAGAGGAGGAGGGGTGTTGTTGCTGAAGGGGTGGAGATGAATGATGGAATTGGTTCTCTTAATTTGAACTTTGGGGGTCAAGTATACCCTATCATGGAAGGGGAGGAAAAAAGTGGAAAGAAGACAAAGATAACTGTGACTACTTCAAACCACGCAGTTTGTCAGGTGGAAGATTGTCGGGCTGATCTTAGTAATGCAAAGGATTACCACCGCCGTCACAAAGTTTGTGATGTGCATTCTAAGGCTAGCAGGGCACTAGTGGGAAATGTTATGCAGCGATTCTGTCAGCAGTGTAGCAGGTTTCATGTTCTTCAAGAGTTTGATGAAGGGAAGAGAAGTTGTCGAAGGCGTCTGGCTGGCCACAATAAGAGGAGGAGGAAAACACATCCTGATGCTACTGCAGTTAATGGAGGTTCTCTGAACGAAGAAAGGGGCAGTAGCTATCTGTTAATGAGTTTGCTGAGGATATTGTCCAATATGCATTGTGGGATAGTGGTGGTGCAGGTAGTGGTGGCCATGACGGTGCCAGTGGCAACAGTGGAGATAGTTGTTAAAGTATTAAACTTAGCAAATGGCTCAGATCATACAAGAAATGAAGATGTTCTATCTCGTCTGCTGGGGAACCTGGCAAGTCAGGCTGGTATAATTAATGGAAGTAATATGGCATCCTTATTGGAGGGATCTCAAGATTTGGTAAAAGCTGGGACATCTAGATCTGCACAAAATGTTCAAAACACAGATTCAAATGGTCCTGGACCATCCAGACCTTTCGGTTCTTCTATCAAGATGGGTAATGGTAAAATCCATCAGGACCCTCTGGAGTCTAGGTTACAGTGTGAGATGGTTCTTGCTAATGATATGACACAAAAATGTACACCTTCAGGCAGTGGTGGGGTTGGAAGTTCTAAACCTCCTTTGGGACCACAATCCTCAAATGTACTTCTGTCAAGGGGTAGCCCACCACCCCAATCAGTTGCAGCAGAGACTACAGTTGGAAGAAATGGCTTAAGTGATATTGACCTGAATAATGTATATGATGATGTGCAGGATTATGTTGAGAACCCCAGGAATTCTCATCCTCCTGTGGCTTCAGGGATTGGGCCTCTTGATCATCCTTTATGGGTACAATGTGACTCTCTCAAGTCAAGTCCACCACAGACAAGTAGAAACTCAGATTCAACCTCTACCCAGTCACCATCTAGCTCTAGTGGAGAAGCTCAGGATCCAAATGATTTTCCTCTTGTTCTTCGATCACAGATCCTTAACTGGTTATCCCACAGTCCCACAGAGATAGAGAGCTATATAAGGCCAGGCTGTATCATATTAACTATATATCTCCGCCTAGAAAATTCTGCATGGGAGGAGCTATGCTATAATCTAGGATCCAGCTTGAGAAAGCTTCTTGCTGCATCAAATGATTCTTTTTGGAGAACAGGATGGGTATACACAAGGGTGCGACACTCTGTAGCTTTTCTGTATAATGGTCAGGTGGTCTTAGATGTGCCATTGCGCCTCAAAAGCCCACAAAATTGTCAGATTTTGTGCATTACACCACTTGCTGTTTCTGCAAGTGCAAGTGCAAAATTTACTGTCAAAGGATTCAACCTTTTCCTGTCTAACACAAGGTTGCTCTGTGCACTTGAAGGGAAGTATCTGGTACAGGATAATTGTTATGAGTTGATTGATGGTGCTGATGCAGCCATTGGACATCATGAGCTTCAGCATCTCAGCTTCTCTTGTCACATACCAAATATGACTGGAAGGGGGTTTATTGAGGTGGTAGAAGATATTGGTCTTAGCAGCTGTTCCTTTCCATTCATAGTTGCAGAGCAAGAAATTTGTTCAGAAATATGTCAGCTGGAGAATGTCATTGAAGCAGCAGAGACTACTGATGACATCCAGATAAAAACCAAATTAATGGAAGAAAAAACTCGAGCATTGTATTTCATACAAGAAATGGGTTGGCTCCTTCATAGAAGTCATATGAAAGTTAGGCTAGGTCCAATGGCACCTGTCCAAGATCGCTTCCATTTTAACCGGTTCACATGGCTTGTTGGTTTCTCTATGGACCATAATTGGTGTGCTGTGATGAAAAAACTCTTAGATATTATCTTTGATGGTGCTGTTGATACAGGAAAGCATTCTTCCATTAAGCTTGCATTATTAGACATGGATCTTCTACACAGAGCTGTAAAGAGAAATTGCAGGCCTATGGTGGAACTACTGTTAAACTTTGTGCCAGTTAAAGCTCCAGATGGTGAAGACACTAAAGAGAAGCAAGCCAACAAGTCCCCTGACATATTCTTATTTAGACCTGATACTGTTGGGCCTGCTGGGTTGACACCCCTTCATGTTGCAGCGAGTACAAATGGCTCTGAGAATGTATTGGATGCATTAACTGATGATCCAGGAATGGTGGGAACTGAGGCATGGAAAAGTGCCAAGGACAATACAGGTTTGACACCCTATGACTATGCATCCCTGAGGGGCTACTACTCCTACATTCAACTTGTTCAAAGGAAAACAAGCAAGAAATGTGAAAGCCAGCATGTGCTTGATATCCCAAGCACCCTTGTAGACAGTAACATAAAGCAGAAGCAATCAGATGGGCACAGGTCATCAAAAGTTTCAAGTTTGCAGACTGAAATAACAGCAATGCCACACCAATGTGGGCTCTGCCAACACAAGCTGGCGTACGGTGGCGTGAGAAGGCCACTGGTTTATAGGCCGGCAATGCTGTCAATGGTGGCCATTGCAGCTGTATGTGTCTGTGTGGCTTTGCTCTTCAAAAGCTCACCAAAAGTTTCTTATGTATTCCAGCCCTTCAACTGGGAATCATTGGAGTATGGGTCAATCTAA 3138 0.4344 MEAKFEGKNQYLYGPVVPEMKSVGKRSLEWDLNDWKWDGDLFTARQLNSVPSDCGSRQLFPVDPEIPANADISNNLTSGWDDINPGEEKRELEKRRRGVVAEGVEMNDGIGSLNLNFGGQVYPIMEGEEKSGKKTKITVTTSNHAVCQVEDCRADLSNAKDYHRRHKVCDVHSKASRALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTHPDATAVNGGSLNEERGSSYLLMSLLRILSNMHCGIVVVQVVVAMTVPVATVEIVVKVLNLANGSDHTRNEDVLSRLLGNLASQAGIINGSNMASLLEGSQDLVKAGTSRSAQNVQNTDSNGPGPSRPFGSSIKMGNGKIHQDPLESRLQCEMVLANDMTQKCTPSGSGGVGSSKPPLGPQSSNVLLSRGSPPPQSVAAETTVGRNGLSDIDLNNVYDDVQDYVENPRNSHPPVASGIGPLDHPLWVQCDSLKSSPPQTSRNSDSTSTQSPSSSSGEAQDPNDFPLVLRSQILNWLSHSPTEIESYIRPGCIILTIYLRLENSAWEELCYNLGSSLRKLLAASNDSFWRTGWVYTRVRHSVAFLYNGQVVLDVPLRLKSPQNCQILCITPLAVSASASAKFTVKGFNLFLSNTRLLCALEGKYLVQDNCYELIDGADAAIGHHELQHLSFSCHIPNMTGRGFIEVVEDIGLSSCSFPFIVAEQEICSEICQLENVIEAAETTDDIQIKTKLMEEKTRALYFIQEMGWLLHRSHMKVRLGPMAPVQDRFHFNRFTWLVGFSMDHNWCAVMKKLLDIIFDGAVDTGKHSSIKLALLDMDLLHRAVKRNCRPMVELLLNFVPVKAPDGEDTKEKQANKSPDIFLFRPDTVGPAGLTPLHVAASTNGSENVLDALTDDPGMVGTEAWKSAKDNTGLTPYDYASLRGYYSYIQLVQRKTSKKCESQHVLDIPSTLVDSNIKQKQSDGHRSSKVSSLQTEITAMPHQCGLCQHKLAYGGVRRPLVYRPAMLSMVAIAAVCVCVALLFKSSPKVSYVFQPFNWESLEYGSI 1045
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi23g00140 1045 Gene3D - 138 208 IPR036893 GO:0003677|GO:0005634
Sebi23g00140 1045 MobiDBLite consensus disorder prediction 381 433 - -
Sebi23g00140 1045 MobiDBLite consensus disorder prediction 472 501 - -
Sebi23g00140 1045 MobiDBLite consensus disorder prediction 470 503 - -
Sebi23g00140 1045 Pfam SBP domain 147 220 IPR004333 GO:0003677
Sebi23g00140 1045 ProSiteProfiles Zinc finger SBP-type profile. 144 221 IPR004333 GO:0003677
Sebi23g00140 1045 SUPERFAMILY SBT domain 145 226 IPR036893 GO:0003677|GO:0005634
Sebi23g00140 1045 MobiDBLite consensus disorder prediction 381 430 - -
Sebi23g00140 1045 MobiDBLite consensus disorder prediction 326 361 - -
Sebi23g00140 1045 FunFam Squamosa promoter-binding-like protein 14 138 208 - -
Sebi23g00140 1045 Gene3D - 797 947 IPR036770 -
Sebi23g00140 1045 MobiDBLite consensus disorder prediction 326 348 - -
Sebi23g00140 1045 MobiDBLite consensus disorder prediction 211 232 - -
Sebi23g00140 1045 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 131 913 IPR044817 GO:0003677
Sebi23g00140 1045 SUPERFAMILY Ankyrin repeat 816 931 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi23g00140 Sebi-Chr23 1808907 1816688 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi23g00140 1 1044 SBP-box Gene Family AT3G60030 45.276 0.0 763
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Sebi23g00140 SBP 1.6e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi23g00140 - - gmx:100776125 1646.33