Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi23g00125 ATGGAACAGTTGAAATTGGCTGCACATTCTGACGCCAAAGAGGTTGGATTTTCAAACCCTAGCAATGATTCTCCTTTTAGGCACAAGCCAAAAAACAACAATGCGCTCGAGTCTTCTGACAGTCTCAGAAATAAAAAGATATCAGCTAGATGGGTTCCAGATGAAGCATGTCGGCCTATAATTGATGAAGCACCTGTGTTTTATCCAACTATTGAAGAGTTTGAAGACACACTTGGTTACATAGCAAGGATACGCCCCCAAGCTGAACCTCATGGCATATGTAGGATCGTCCCTCCACCTTGCTGGGTTCCACCCTGCCCTCTTAAGGAGAAAGATCTATGGGAAAATGCTGAATTTCCCACCCGTATTCAGCAAATTGATTTACTTCAAAATAGGGAACCTATGAGGAAAAAGAGTAGAGGAAGGAAACGAAAACGTAGAAAGAACTCCAAATTGGGCACATGTAGGAGACTTGCCAATTCAGCTTCTGAGGCTAATAATGCTTCTGAATCTGATGAGAAATTTGGATTCCAATCAGGGTCGGATTTCACACTTCAAGACTTCCAGCAATATGCTAACTTTTTTAAGGAATGCTACTTTGGGTTGAAAGATGCCAATGAAGATGGAAGAATTGGTGATAGTGACCACAAGAAGAGATGGGAGCCCTCTGAGGAGGAAATTGAAGGTGAATACTGGCGAATAATTGAGCAACCAACTGATGAGGTTGAGGTGTATTATGGAGCTGACTTGGAAACTGGAGAACTTGGAAGTGGTTTTCCTAAGGCATCATCCTTAACTAAGAGTGATTTGGATCAGTATGCCCTGTCTGGCTGGAATCTGAATAACTTCCCGCGATTGCCAGGTTCTGTGCTAAGTTTTGAAGGAAGTGACATCTCAGGAGTTCTAGTGCCATGGCTTTATGTTGGCATGTGTTTTTCTTCATTTTGCTGGCATGTTGAGGATCATCATCTCTATTCACTTAATTATCTGCACTGGGGTGACCCAAAAGTATGGTATGGAGTACCAGGAAGCCATGCTTCAGCTTTTGAAAATGCAATGAGGAAGCACTTGCCAGATTTATTTGAAGAACAACCAAATCTACTCAATGAACTGGTTACTCAATTATCTCCTTCAATTCTTAAATCTGAGGGAGTGCCTGTGTATCGCACAGTTCAGCATTCTGGGGAATTTGTTATTACCTTTCCAAGGGCATACCACTCTGGCTTCAATTGTGGCTTCAACTGTGCAGAGGCAGTGAACGTGGCTCCTGTTGATTGGTTAATGCATGGCCAGAATGCTGTCGAGGTTTATAGTTTACAATGCCGGAAGACATCATTGTCACATGACAAGCTGTTATTTGGGTCAGCACTGGAAGCTGTACGAGCCCTTGCAGATCTATCTATTTTAGGAAAGGAAACTACAAAAAATTTGAAATGGAGAAGTGTTTGTGGGAAGGATGGAGTTCTTACTAAGGCAGTTAAGATTTGA 1488 0.4234 MEQLKLAAHSDAKEVGFSNPSNDSPFRHKPKNNNALESSDSLRNKKISARWVPDEACRPIIDEAPVFYPTIEEFEDTLGYIARIRPQAEPHGICRIVPPPCWVPPCPLKEKDLWENAEFPTRIQQIDLLQNREPMRKKSRGRKRKRRKNSKLGTCRRLANSASEANNASESDEKFGFQSGSDFTLQDFQQYANFFKECYFGLKDANEDGRIGDSDHKKRWEPSEEEIEGEYWRIIEQPTDEVEVYYGADLETGELGSGFPKASSLTKSDLDQYALSGWNLNNFPRLPGSVLSFEGSDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKVWYGVPGSHASAFENAMRKHLPDLFEEQPNLLNELVTQLSPSILKSEGVPVYRTVQHSGEFVITFPRAYHSGFNCGFNCAEAVNVAPVDWLMHGQNAVEVYSLQCRKTSLSHDKLLFGSALEAVRALADLSILGKETTKNLKWRSVCGKDGVLTKAVKI 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi23g00125 495 PANTHER LYSINE-SPECIFIC DEMETHYLASE 59 494 - -
Sebi23g00125 495 MobiDBLite consensus disorder prediction 129 152 - -
Sebi23g00125 495 SUPERFAMILY Clavaminate synthase-like 272 458 - -
Sebi23g00125 495 MobiDBLite consensus disorder prediction 1 41 - -
Sebi23g00125 495 ProSiteProfiles JmjN domain profile. 64 105 IPR003349 -
Sebi23g00125 495 SMART cupin_9 272 438 IPR003347 -
Sebi23g00125 495 Pfam jmjN domain 65 98 IPR003349 -
Sebi23g00125 495 SMART JmjN_1 63 104 IPR003349 -
Sebi23g00125 495 ProSiteProfiles JmjC domain profile. 272 438 IPR003347 -
Sebi23g00125 495 MobiDBLite consensus disorder prediction 15 41 - -
Sebi23g00125 495 MobiDBLite consensus disorder prediction 136 152 - -
Sebi23g00125 495 Pfam JmjC domain, hydroxylase 305 421 IPR003347 -
Sebi23g00125 495 Gene3D Cupin 49 422 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi23g00125 Sebi-Chr23 1678778 1683096 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi23g00125 22 494 JUMONJI Transcription Factor Family AT1G30810 67.437 0.0 624
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Sebi23g00125 JmjC 5.5e-48 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi23g00125 K11446 - gmx:100801775 857.44