Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi23g00106 ATGAGTTTTTGGGCTACAGTATCGGTTATGACTAATCAATTTATTCCATTCTCTGCCACTATTACTGAATCTGCCATGAAGTCCAAATTGGGCGCCGGATTCCCAAAAATACACTTAAATACAAACAAAGGAAAATTCAGTCTTTCTTTTGCTAGGGACTATTATGAAGTTGGGAGTAATGGTGCAACCAAATCAAGCCGAGAAGTATCTTATTTGCAAACCCAACAAGAGCAAGGAACTTGGGAAGAACCAGATATTGACAGTGGAAGTGACAGTGAGTATGATGATGAAGAAGATGAGCAAGTTGAAGATGAGAACCTTGGATTTGAAAGTGATTGGGAAGAGGAGCAGACCGAAACTTCAGATATTACTGATGTTAATATAACTTCAAGAGGCAAGTATGAGATTGAGGAGAGTATTATTAAGAAAGAGGTTGAACAGCTTTTGGAACCCGAAGAAAGAGCAATATTGCAACAGAACGCAAAATGGAGCCCACTGCACTCTCTTGCGCTATCAATGCAGATAAGTTGCATGGATAAGCTTCTTGAAAATGGTTTTGATATTGATTCCCTTAATAAGGAAGGTCTCACTGCACTTCATAAAGCAATTATTGGTAAAAAGGAAGCTGTAATAAGCCACCTTTTACGGAAAGGTGCAAGTCCACATGTTAAGGATAAGGATGGAGTTACTCCTCTTCATTATGCAGTTCAAGTTGGTGCCAAGCAAACTGTGAAATTATTGATCAAGTACAAGGTTGATGTCAATGTTGCAGATACTGAAGGTTGGACCCCATTGCATGTTGCCATTCAAAGCAGAAATAGAGATATAGCGAAAATTTTGTTAGTCAATGGTGCAGATAAGACAAGAAAAAATAAGGATGGAAAAACAGCTCTGGATCTAAGCTTATGTTATGGGAAAGACTTCAAGTCTTATGACCTTGCCAGAGTAGTGAAGATTATAGTGGCTTCTACAAGCTTGATGCTGTTTGCTGAAAGGTTTGTGTTGGCTCCATCAGCCAATAGGAAAGCCACTGTAGGGATACAGCTGAGGTGA 1053 0.3932 MSFWATVSVMTNQFIPFSATITESAMKSKLGAGFPKIHLNTNKGKFSLSFARDYYEVGSNGATKSSREVSYLQTQQEQGTWEEPDIDSGSDSEYDDEEDEQVEDENLGFESDWEEEQTETSDITDVNITSRGKYEIEESIIKKEVEQLLEPEERAILQQNAKWSPLHSLALSMQISCMDKLLENGFDIDSLNKEGLTALHKAIIGKKEAVISHLLRKGASPHVKDKDGVTPLHYAVQVGAKQTVKLLIKYKVDVNVADTEGWTPLHVAIQSRNRDIAKILLVNGADKTRKNKDGKTALDLSLCYGKDFKSYDLARVVKIIVASTSLMLFAERFVLAPSANRKATVGIQLR 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi23g00106 350 Gene3D - 135 230 IPR036770 -
Sebi23g00106 350 SMART ANK_2a 260 289 IPR002110 GO:0005515
Sebi23g00106 350 SMART ANK_2a 194 223 IPR002110 GO:0005515
Sebi23g00106 350 SMART ANK_2a 227 256 IPR002110 GO:0005515
Sebi23g00106 350 SMART ANK_2a 161 190 IPR002110 GO:0005515
Sebi23g00106 350 Gene3D - 231 309 IPR036770 -
Sebi23g00106 350 ProSiteProfiles Ankyrin repeat profile. 260 292 IPR002110 GO:0005515
Sebi23g00106 350 MobiDBLite consensus disorder prediction 65 83 - -
Sebi23g00106 350 MobiDBLite consensus disorder prediction 84 121 - -
Sebi23g00106 350 ProSiteProfiles Ankyrin repeat region circular profile. 227 258 - -
Sebi23g00106 350 Pfam Ankyrin repeats (3 copies) 210 291 IPR002110 GO:0005515
Sebi23g00106 350 ProSiteProfiles Ankyrin repeat region circular profile. 194 226 - -
Sebi23g00106 350 PANTHER ANKYRIN REPEAT FAMILY PROTEIN 143 340 - -
Sebi23g00106 350 Gene3D - 313 350 IPR023618 GO:0009522|GO:0015979
Sebi23g00106 350 SUPERFAMILY Ankyrin repeat 158 305 IPR036770 -
Sebi23g00106 350 MobiDBLite consensus disorder prediction 65 121 - -
Sebi23g00106 350 ProSiteProfiles Ankyrin repeat region circular profile. 260 286 - -
Sebi23g00106 350 Pfam Ankyrin repeats (many copies) 163 209 IPR002110 GO:0005515
Sebi23g00106 350 ProSiteProfiles Ankyrin repeat profile. 194 226 IPR002110 GO:0005515
Sebi23g00106 350 ProSiteProfiles Ankyrin repeat profile. 227 259 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi23g00106 Sebi-Chr23 1416996 1421144 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi23g00106 178 301 Ion Channels AT2G25600 28.387 8.09e-09 55.5