Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi23g00088 ATGAGGCAGAAGGGTGATGCAATGAAGCAGCCTTTTGATCCTTCATCTTTGGGTCCTTCCAAGATACCATCTGTAAATATACCTAGAAAATCAGGTGGCAGTGCATGGGAGGTTTTATCCGGATCTGATTCCTACCATGCCTCATCTGATGCTAGCCTCTTTTCTAGCTCATTACCTGTTCTTCCGCATGAAAAATTGAATATAAATGGCACTGAAAACGGTTATCAATCTGTTGATGACATTTCATCTGACTTTAAAAAGCTCCATCAAGAGGGAAATGATTCCCTTGAAGATGGTCATACTCATGCAATTGGAACCATGCTTCCTGATGACGAGGAGGAGCTTTTAGCTGGCATCATGGATGATTTCGACCTAAGTGGTTTGCCTGGTTCCCTTGAGGATTTGGAAGAGTATGATCTTTTTGGTAGTGGTGGAGGTATGGAACTAGAAACTGATCCACAGGAAAGTCTAAGTGTGGGTATATCTAAGTTAAACTTCTCTGATAGTTCTGCTGGCAATGGTTTGCCACAATACTCTTTCCCTAATGGTGTGGGAACTATTGCTGGAGAACATCCATATGGAGAGCATCCTTCCCGAACTTTATTTGTTCGAAATATTAACAGTAACGTAGAGGATTCAGAGCTAAGAGCTCTTTTTGAGCAATATGGGGATATTAGAACCCTATATACTGCATGTAAACATCGGGGGTTTGTAATGATATCCTATTATGACATCCGTGCTGCTCGAACAGCTATGCGTGCATTGCAAAACAAACCTCTGCGGCGCAGGAAACTTGACATTCACTTCTCAATTCCAAAGGATAATCCATCAGACAAGGATATCAACCAAGGAACTCTGGTAGTTTTCAATTTGGATCCATCTGTTTCAAACGAAGACCTCCGTCAAATATTTGGGGCTTATGGAGAGGTCAAAGAGATAAGGGAAACGCCTCACAAGAGGCATCATAAGTTTATTGAATTTTATGATGTCAGAGCTGCAGAAGCAGCACTTAAATCATTAAATAGGAGTGACATAGCTGGTAAACGCATAAAGCTTGAACCTAGTCGGCCTGGAGGAGCTCGTCGAAATTTGATGCTCCAACTAAACCAAGAGCTTGACCAAGATGAATCTCGGAGTTTTAGATATCAAGTGGGTTCGCCTGTTGCTAACTCTCCGCCAGGTAACTGGTTACAGTTTAACAGCCCTGTTGAGCAGAATTCAATGCAAAGTATCAATCATTCTCCTGGTTCTAGGATCATGAGCCCAACAACAGGCAATCATTTACCAGGATTAGCTTCAATTTTGCAACCACAGGTATCAAACACTGTGAAGGCTGCAACTATTGGCAAGGACTTAGGAAGGAGTAATCATGGAGAGCACATATTCAACAGTATGAATTCATCACATGGAGCTACTTTTCAGTCTCATTCACTTCCAGAGCCAAAATTTAGCCAATATCGTGGAGCTTTGTCCTCTTTTGGTCCATCAACATCAAATGGATCCTCAGTAGAAACCTTGTCTGGGCCACAATTTTTATGGGGAAGTCCAACCCTCTACTCTGAGCATACTAAACCTTCAGCTTGGCCAAGACCATCTGTGGGGAATCCATTTACATCGAATGGAAAGAGCCATGCCTTCCCATACTCAAATCAAAATAGTTCTTTTGTCAGTTCTTCACAACAGCAGCATGTTGGCTCTGCTCCATCAGGTTTGCCTTTTGAGAGGCACTTTGGTTTTCTTCCTGAGTCACCTGATACTTCATTCATGAATAATGTTAGTTATGGAGGCATGGGTCTGGGGCACAATGATGGAAATTACATGGTTAATGTGGGTGGATCTGTTAATACTGGTATTTCTATACCAAGAAATATGCCTGATAATGGTTCATCAAACTTCAGAATGAGATCTTCTCCTAGGCTTAGCCCTGTATTTTTGGGTAATGGTCCTTATCCAGGATTCCCACCTACTGCCATGGAGAGTTTGACTGATCGTGCTCGGAGTAGATGGATGGAGAACAATGGAAGCCAAGTCGACAACAAGAAGCAATTTCAGCTTGACTTGGATAAGATTAAAAGCGGTGAAGATACAAGGACTACATTAATGATAAAGAATATCCCAAATAAATACACCTCAAAAATGTTATTAGCTGCCATTGATGAAAATCACAGGGGAACCTATGATTTTCTTTATTTGCCAATTGACTTTAAGAATAAATGCAATGTAGGTTATGCATTTATCAACATGCTGTCACCGTCACTTATTATTCCATTCTACGAGACTTTCAATGGGAAGAAGTGGGAGAAGTTTAACAGTGAAAAAGTTGCTTCTTTGGCATATGCTCGGATCCAAGGAAAGACTGCCCTTGTGAGCCACTTCCAAAATTCAAGTTTGATGAATGAAGATAAGCGCTGCCGCCCCATTCTCTTCCACTCAGAGGGTTCTGAAGCTGGTGATCAGATCATACAAGAGCATCTTCCATCCAACTCCAACAATCTAAATATTCAGGCACATAGGCCAAGTGAGTTACTTTCAAGTGATTCTCACGGAAGCCCTCCAAAGGATGGTCCTCCTTTGAGCTTGGACCAAAATTAA 2592 0.4171 MRQKGDAMKQPFDPSSLGPSKIPSVNIPRKSGGSAWEVLSGSDSYHASSDASLFSSSLPVLPHEKLNINGTENGYQSVDDISSDFKKLHQEGNDSLEDGHTHAIGTMLPDDEEELLAGIMDDFDLSGLPGSLEDLEEYDLFGSGGGMELETDPQESLSVGISKLNFSDSSAGNGLPQYSFPNGVGTIAGEHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDINQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGARRNLMLQLNQELDQDESRSFRYQVGSPVANSPPGNWLQFNSPVEQNSMQSINHSPGSRIMSPTTGNHLPGLASILQPQVSNTVKAATIGKDLGRSNHGEHIFNSMNSSHGATFQSHSLPEPKFSQYRGALSSFGPSTSNGSSVETLSGPQFLWGSPTLYSEHTKPSAWPRPSVGNPFTSNGKSHAFPYSNQNSSFVSSSQQQHVGSAPSGLPFERHFGFLPESPDTSFMNNVSYGGMGLGHNDGNYMVNVGGSVNTGISIPRNMPDNGSSNFRMRSSPRLSPVFLGNGPYPGFPPTAMESLTDRARSRWMENNGSQVDNKKQFQLDLDKIKSGEDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMLSPSLIIPFYETFNGKKWEKFNSEKVASLAYARIQGKTALVSHFQNSSLMNEDKRCRPILFHSEGSEAGDQIIQEHLPSNSNNLNIQAHRPSELLSSDSHGSPPKDGPPLSLDQN 863
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi23g00088 863 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 199 272 IPR000504 GO:0003723
Sebi23g00088 863 FunFam Protein MEI2-like 1 283 378 - -
Sebi23g00088 863 CDD RRM1_MEI2_like 198 274 IPR034453 -
Sebi23g00088 863 SMART rrm1_1 699 775 IPR000504 GO:0003723
Sebi23g00088 863 SMART rrm1_1 200 268 IPR000504 GO:0003723
Sebi23g00088 863 SMART rrm1_1 285 353 IPR000504 GO:0003723
Sebi23g00088 863 MobiDBLite consensus disorder prediction 539 567 - -
Sebi23g00088 863 Pfam RNA recognition motif 2 697 793 IPR007201 -
Sebi23g00088 863 MobiDBLite consensus disorder prediction 829 847 - -
Sebi23g00088 863 SUPERFAMILY RNA-binding domain, RBD 699 783 IPR035979 GO:0003676
Sebi23g00088 863 SUPERFAMILY RNA-binding domain, RBD 196 359 IPR035979 GO:0003676
Sebi23g00088 863 Gene3D - 188 282 IPR012677 -
Sebi23g00088 863 CDD RRM3_MEI2_like 700 785 IPR034454 -
Sebi23g00088 863 MobiDBLite consensus disorder prediction 539 568 - -
Sebi23g00088 863 MobiDBLite consensus disorder prediction 1 33 - -
Sebi23g00088 863 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 201 265 IPR000504 GO:0003723
Sebi23g00088 863 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 286 351 IPR000504 GO:0003723
Sebi23g00088 863 CDD RRM2_MEI2_like 283 353 - -
Sebi23g00088 863 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 284 357 IPR000504 GO:0003723
Sebi23g00088 863 FunFam MEI2-like protein 5 isoform 2 188 282 - -
Sebi23g00088 863 MobiDBLite consensus disorder prediction 829 863 - -
Sebi23g00088 863 PANTHER RNA RECOGNITION MOTIF-CONTAINING 43 839 - -
Sebi23g00088 863 Gene3D - 283 382 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi23g00088 Sebi-Chr23 1135701 1140064 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi23g00088 194 392 Eukaryotic Initiation Factors Gene Family AT1G71770 25.561 9.00e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi23g00088 - - gmx:100800877 1533.47