Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi23g00082 ATGACGTCACGTTCCGGCGCCGGCGGCGGAAGCGGAAGCGCCAGGACCCGAGTGGGGAAGTATGAACTAGGTAGGACCCTTGGCGAGGGCAATTTCGCGAAGGTGAAGTTTGCGAGGCATGTGGAAACTGGAGAACATATGGCCATCAAAATTCTTGACAAGGAAAAAGTTCTCAAGCACAAAATGATTGGTCAGATAAAGCGAGAAATATCAACAATGAAACTGATTAGACACCCAAATGTCATACGCATGTATGAGGTGATGGCTAGCAAGACAAAGATATATATTGTATTGGAATTTGTGACTGGTGGGGAGTTGTTTGATAAAATTGCACGCAATGGAAAGTTGAAAGAAGATGAAGCAAGAAAATATTTTCAACAGCTTATATGTGCTGTGGATTACTGTCATAGTAGGGGTGTTTTCCATAGAGACCTAAAGCCTGAGAATTTGTTGCTGGATGCTAATGGAGTGCTTAAAGTATCAGATTTTGGATTGAGTGCATTGCCTCAACAAGTTCGGGAAGATGGGCTACTTCACACAACATGCGGTACGCCAAATTATGTTGCTCCAGAGGTGATCCACAACAAAGGCTATGATGGTGCAAAGGCAGATCTCTGGTCATGTGGTGTTATTCTATTTGTTTTAATGGCTGGCTATTTGCCCTTCGAAGAAAACAATCTTATGGCTTTATATAAAAAGATTTTCAAGGCCGAGTTCACATGTCCCCCATGGTTCTCTTCAAGTGCAAAGAAACTAATCAAAAGAATCCTTGATCCCAATCCTTCCACACGGATTACAATTTCTGAGGTCATTGAGAATGAGTGGTTCAAAAAGGGATATAAGCCTCCTGTGTTTGAACAGGCCAATGTTAGTCTTGATGATGTAAATTCTATTTTTGGTGAAGCTACGGATTCACAAAATCTTGTTGTTGAGAGGCGTGAAGAGGGGCATGTGGGTGTGGCACCAACAACCATGAATGCATTTGAGCTTATCTCTAAATCTCAGGGCCTCAACCTTAGCAGTCTTTTCGAAAAGCAAATGGGACTTGTTAAAAGGGAAACAAGGTTCACATCCAAATGTTCAGCAGATGAGATTATTTCAAAAATTGAGCAAGCTGCAGGACCTCTGGGTTTTGATGTTAAGAAGAACAACTGTAAGTTAAAGATTCAAGGGGAAAAGACTGGACGAAAAGGTCATCTATCTGTAGCCACTGAGATCTTGGAGGTGGCCCCTTCACTTTACATGGTTGAGCTGCGTAAGTCTGAAGGAGATACTCTGGAATTTCACAAGTTCTACAAGAATCTAGCTACTGGGCTGAAAGATATCGTTTGGAAAGCAGAGCCTATTGATGAAGAAAAAGAGGATGGTTAG 1371 0.4216 MTSRSGAGGGSGSARTRVGKYELGRTLGEGNFAKVKFARHVETGEHMAIKILDKEKVLKHKMIGQIKREISTMKLIRHPNVIRMYEVMASKTKIYIVLEFVTGGELFDKIARNGKLKEDEARKYFQQLICAVDYCHSRGVFHRDLKPENLLLDANGVLKVSDFGLSALPQQVREDGLLHTTCGTPNYVAPEVIHNKGYDGAKADLWSCGVILFVLMAGYLPFEENNLMALYKKIFKAEFTCPPWFSSSAKKLIKRILDPNPSTRITISEVIENEWFKKGYKPPVFEQANVSLDDVNSIFGEATDSQNLVVERREEGHVGVAPTTMNAFELISKSQGLNLSSLFEKQMGLVKRETRFTSKCSADEIISKIEQAAGPLGFDVKKNNCKLKIQGEKTGRKGHLSVATEILEVAPSLYMVELRKSEGDTLEFHKFYKNLATGLKDIVWKAEPIDEEKEDG 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi23g00082 456 ProSiteProfiles NAF domain profile. 320 344 IPR018451 GO:0007165
Sebi23g00082 456 FunFam Non-specific serine/threonine protein kinase 12 100 - -
Sebi23g00082 456 CDD CIPK_C 326 441 - -
Sebi23g00082 456 SMART serkin_6 21 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi23g00082 456 ProSitePatterns Serine/Threonine protein kinases active-site signature. 140 152 IPR008271 GO:0004672|GO:0006468
Sebi23g00082 456 Pfam Protein kinase domain 21 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi23g00082 456 Gene3D Transferase(Phosphotransferase) domain 1 101 283 - -
Sebi23g00082 456 SUPERFAMILY Protein kinase-like (PK-like) 18 292 IPR011009 -
Sebi23g00082 456 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 18 430 - -
Sebi23g00082 456 FunFam Non-specific serine/threonine protein kinase 319 445 - -
Sebi23g00082 456 Gene3D Kinase associated domain 1, KA1 320 445 - -
Sebi23g00082 456 Gene3D Phosphorylase Kinase; domain 1 11 100 - -
Sebi23g00082 456 Pfam NAF domain 322 382 IPR004041 GO:0007165
Sebi23g00082 456 FunFam Non-specific serine/threonine protein kinase 14 316 - -
Sebi23g00082 456 ProSitePatterns Protein kinases ATP-binding region signature. 27 50 IPR017441 GO:0005524
Sebi23g00082 456 CDD STKc_SnRK3 20 275 - -
Sebi23g00082 456 ProSiteProfiles Protein kinase domain profile. 21 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi23g00082 Sebi-Chr23 1088955 1095115 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi23g00082 10 454 CBL-interacting serine-threonine protein kinases AT1G01140 68.071 0.0 651
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Sebi23g00082 Pkinase 3.2e-76 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi23g00082 - - gmx:100788746 831.632