Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi23g00061 ATGTGTGTTCAGGATGCAGAGCAAGTTGCCCCAAATGAGGATAACAACAGAGGGAAGTCTTGGCCTTTGTATGGTGAGCTTTTGCTTACCCAGATGGACAATTGGGAAAAAGGACCTTCTTTCACTGACAGGATGAGTGTTCAAAGTTCTTTCCCTCTGGAAAGCATATGCGAGGACACTGTGATTGCTGACAAGAAACAGAACCTGATGAATTTTGTCCCTGCAATTCGCTCTGGAGAGTGGTCTGATATTGGAGAACGCCCTTACATGGAGGATACTCACATATGCATTGAAGATTTGGCAAAGAAGTTTAATTACAACGTACTTCCTGAGGAAGCTGTTTCCTTTTATGGTGTGTTTGATGGGCATGGAGGGAAAAGTGCTGCACAATTTGTCCGTGATCATCTGCCAAGAGTTATTGTTGAGGATGTTAACTTTCCTTTGGATCTTGAGAAGGTGGTCAAAAGGTCTTTACTTGTAGCTAATGCTGGAGACTGCAGGGCTGTCTTGTCCCGTCAAGGAAGGGCTATAGAAATGTCCAAAGATCATAGGCCAAACTGCATCAAAGAAAGGAAGCGGATTGAGTCACTAGGTGGATTCATTGATGATGGTTACCTGAATGGCCAATTAGGTGTCACTCGTGCTCTAGGTGACTGGCACCTTGAAGGAATGAAGGAAATGAGTGAAAGAGGTGGACCACTGAGTGCTGAACCTGAACTTAAATTGATGACATTGACCAAAGAAGATGAATTCTTGATAATTGCTAGTGATGGAATTTGGGATGTTTTTAGTAGCCAAAATGCTGTAGATTTTGCTAGAAGGAGGCTTCAAGAGCATAATGATGAGCAACTATGCTGCAAGGAAATGGTGCAGGAAGCAATCAAGAGAGGATCAACAGACAACTTGACAGTTGTAATGGTGTGTTTTAACTCAGAACCACCACCACCCGTGGTTGTAGAAAGAGCACGAGTAAGGAGAAGCATATCTGCAGAGGGACTTCAGAATCTTAAATGCCTGCTAGAAGGGTAG 1029 0.4354 MCVQDAEQVAPNEDNNRGKSWPLYGELLLTQMDNWEKGPSFTDRMSVQSSFPLESICEDTVIADKKQNLMNFVPAIRSGEWSDIGERPYMEDTHICIEDLAKKFNYNVLPEEAVSFYGVFDGHGGKSAAQFVRDHLPRVIVEDVNFPLDLEKVVKRSLLVANAGDCRAVLSRQGRAIEMSKDHRPNCIKERKRIESLGGFIDDGYLNGQLGVTRALGDWHLEGMKEMSERGGPLSAEPELKLMTLTKEDEFLIIASDGIWDVFSSQNAVDFARRRLQEHNDEQLCCKEMVQEAIKRGSTDNLTVVMVCFNSEPPPPVVVERARVRRSISAEGLQNLKCLLEG 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi23g00061 342 SUPERFAMILY PP2C-like 69 311 IPR036457 -
Sebi23g00061 342 CDD PP2Cc 76 309 IPR001932 -
Sebi23g00061 342 SMART PP2C_4 67 307 IPR001932 -
Sebi23g00061 342 Gene3D - 72 323 IPR036457 -
Sebi23g00061 342 PANTHER PROTEIN PHOSPHATASE 2C 66 307 IPR015655 GO:0004722|GO:0006470
Sebi23g00061 342 ProSiteProfiles PPM-type phosphatase domain profile. 77 309 IPR001932 -
Sebi23g00061 342 ProSitePatterns PPM-type phosphatase domain signature. 116 124 IPR000222 GO:0043169
Sebi23g00061 342 Pfam Protein phosphatase 2C 154 301 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi23g00061 Sebi-Chr23 773461 776006 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi23g00061 44 342 PP2C-type Phosphatase Gene Family AT2G25620 51.917 1.94e-114 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBP Sebi23g00061 PP2C 4.9e-51 CL0238