Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi23g00057 ATGGCAGGAATGCTTCCAGGAGTTGAATGTGCTCGAAGAAGAAGGTTCCATAAGAGTGGAGGATGCTTGGATTCACCATCTCTCTCTCCCCATAACTCCACAAGACGCTCTTCTTTCTGTTTGTATGCAAGTAACAATGAATCCCGTCTTTCTTCATCACTGCAAAGAAGCATGTTATACCAGGCACAAACAGATGAGAGTATGGTAGGAGCAGCCAGAGAAGCCAAACAAAGATTGGATGACAAGTTCAGAGCACAAAGGGTATCAGAAAACAAAAGGCAAAGTAGCATAAAGTGTGTGGAGGAGAGAAGAAGAAGCTTAGGAGAGTTGCAGACAGAGGTATATGGATCAAAGAAAAGTGGTCCAAGGAGGTTCAGTTGGAGCAAATTGAGCTGGAAGGCGTCAGAACAAGAGGATTGTGCCGTTTGTTTGGAACCATTCAGGAATGGAGAGACATTGACCCCTCTCCCTTGTGCTCATAGATTCCATTCCAGATGCTTGAAACCATGGTTAGATAATAATTCTCACTGTCCATGCTGCAGAAAAGACATTCTTCTCCTCTAG 564 0.4415 MAGMLPGVECARRRRFHKSGGCLDSPSLSPHNSTRRSSFCLYASNNESRLSSSLQRSMLYQAQTDESMVGAAREAKQRLDDKFRAQRVSENKRQSSIKCVEERRRSLGELQTEVYGSKKSGPRRFSWSKLSWKASEQEDCAVCLEPFRNGETLTPLPCAHRFHSRCLKPWLDNNSHCPCCRKDILLL 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi23g00057 187 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 121 185 IPR013083 -
Sebi23g00057 187 ProSiteProfiles Zinc finger RING-type profile. 140 181 IPR001841 -
Sebi23g00057 187 SMART ring_2 140 180 IPR001841 -
Sebi23g00057 187 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 77 184 IPR044675 -
Sebi23g00057 187 Pfam Ring finger domain 139 181 IPR001841 -
Sebi23g00057 187 SUPERFAMILY RING/U-box 128 185 - -
Sebi23g00057 187 CDD RING-H2_PA-TM-RING 139 181 - -
Sebi23g00057 187 FunFam Zinc finger family protein 114 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi23g00057 Sebi-Chr23 755120 755959 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi23g00057 1 84 C3H Transcription Factor Family AT2G15580 46.316 2.53e-18 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi23g00057 - - gmx:100527583 276.559