Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi23g00052 ATGGCTTTCCATGACCATCTATCACACGAAATCACTTTTCAGCCTTTCACCGACGAGCAACAGTTAAGTCAAAGCAGAGACATGCAGAGGATGCTACCACTCTCCGGCGGCGGTGGTGCGGCGCCGACGTGGCTCAACAACGCCGCCACACTTCGGCAGCAGAATTTCCTCCACTTGCAACCGGATCACTCGACGCCGCAAAACGACGACGTTCGAGGACTGATTGGAACATCAGAGAAAAGCACGGATCGGAACCGGACGGAAAGCAACGCTGAATCGGAGGATTTAGCAGAATACAAAGCAGACATTTTAGGTCACCCTCTGTATGACCAGCTTCTTTCAGCTCACGTTTCGTGTTTGAGGATCGCCACACCGGTGGACCAGCTTCCACGGATCGATGCTCAGCTTCAACAGTCGCAGCGCGTGGTGGATAAGTACTCTGGCCTTGGGAATGGAGTGGTAGATGAGAAGGAGCTTGATCAATTCATGACGCATTATGTTTTACTTCTCTGCGCTTTTAAAGAGCAATTGCAACAGCATGTCCGTGTTCATGCCATGGAAGCTGTTATGGCTTGTTGGGAGCTCGAGCAATCTCTGCAAAGCTTGACCGGAACAGGTGTATCTCCTGGGGAAGGAACGGGTGCAACCATGTCAGACGATGAAGAAGACCAAGCAGAGAGCAATGCTAACTTATACGAAGCAAGTTTGGATGGCGCTGACAGTCTCAGCTTTGGCCCTCTTGTTCCCACTGAAAGTGAGAGATCTTTGATGGAGCGTGTGAGGCAAGAGTTGAAGCATGAGCTAAAACAGGGTTACAAGGAGAAGATCGTGGACATAAGAGAAGAAATTCTACGGAAGAGAAGAGCCGGGAAGCTCCCTGGGGATACTACTTCCCTTTTAAAAGCATGGTGGCAGTCACATTCTAAATGGCCCTATCCAACGTGA 945 0.5026 MAFHDHLSHEITFQPFTDEQQLSQSRDMQRMLPLSGGGGAAPTWLNNAATLRQQNFLHLQPDHSTPQNDDVRGLIGTSEKSTDRNRTESNAESEDLAEYKADILGHPLYDQLLSAHVSCLRIATPVDQLPRIDAQLQQSQRVVDKYSGLGNGVVDEKELDQFMTHYVLLLCAFKEQLQQHVRVHAMEAVMACWELEQSLQSLTGTGVSPGEGTGATMSDDEEDQAESNANLYEASLDGADSLSFGPLVPTESERSLMERVRQELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSLLKAWWQSHSKWPYPT 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi23g00052 314 Pfam KNOX2 domain 154 203 IPR005541 GO:0003677|GO:0005634
Sebi23g00052 314 Pfam ELK domain 263 284 IPR005539 GO:0003677
Sebi23g00052 314 MobiDBLite consensus disorder prediction 76 94 - -
Sebi23g00052 314 Pfam KNOX1 domain 99 140 IPR005540 GO:0003677|GO:0005634
Sebi23g00052 314 MobiDBLite consensus disorder prediction 60 75 - -
Sebi23g00052 314 SMART KNOX2_2 148 204 IPR005541 GO:0003677|GO:0005634
Sebi23g00052 314 ProSiteProfiles ELK domain profile. 263 283 IPR005539 GO:0003677
Sebi23g00052 314 MobiDBLite consensus disorder prediction 60 94 - -
Sebi23g00052 314 SMART KNOX1_2 97 141 IPR005540 GO:0003677|GO:0005634
Sebi23g00052 314 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 102 314 - -
Sebi23g00052 314 MobiDBLite consensus disorder prediction 203 226 - -
Sebi23g00052 314 MobiDBLite consensus disorder prediction 1 25 - -
Sebi23g00052 314 Gene3D - 251 314 - -
Sebi23g00052 314 SMART ELK_2 263 284 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi23g00052 Sebi-Chr23 708541 712030 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi23g00052 97 314 Homeobox Transcription Factor Family AT5G25220 82.432 6.73e-130 375
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi23g00052 - - gmx:100816347 549.666