Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi23g00040 ATGGATATGGACGAACTTGACCATGTCCCAAAAGTTACAATTGTCCCTCTTCCTTCTTCTCTTCAAGTTCCAATGGAGATTTTCAAATGCTTGTACATCAATCTTCTCGCTACTTTCATGCTATCAGCAGTTTTAGCAATCGACCCTTATTCAGAAGCACTCCTGAGCCTAAAATCTGAACTTGTAGATGATGATAACAGCTTGCATGACTGGGTGGTGCCACCCTCTGGAGGCAGCTTAACTGGGAAATCCTATGCATGTTCTTGGTCTGGTATCAAGTGTGACAAGGACTCAACAATTGTAACTTCCATAGACCTGTCTATGAAGAAACTTGGGGGTGTATTATCAGGGAAGCAATTTAGCGTCTTCACAAAGCTTGCTGATCTCAACCTGAGCCACAATTTCTTCTCTGGGCAGCTGCCAGCTGAAATTTTCAACCTCACCAGCCTAAAGAGCTTGGATATCAGCAGAAACAATTTTTCTGGTCACTTCCCAGGGGGAATTCCCAGACTCCAAAATTTGGCTGTGCTTGATGCCTTTAGCAACAGCTTTTCAGGGCCATTGCCTGCTGAATTTTCACAGCTAGAATATCTCAAGGTTCTTAATCTGGCTGGGAGTTACTTCAGAGGATCAATTCCATCTGAATATGGTTCTTTCAGAAGCCTTGAGTTTCTTCATCTAGCAGGAAATTCTCTCACAGGAAGTATACCTCCAGAACTGGGTAACCTCAAAACAGTGACCCACATGGAGATTGGCTACAACTTTTACCAGGGTTTTATTCCACCCCAACTAGGTAACATGAGCCAGCTTCAGTATCTTGACATAGCAGGTGCAAATCTTTCCGGTCCAATACCAAAGGAGCTCTCCAATCTCACCAGTTTGCAATCACTTTTTCTGTTCAGAAACCAGCTCACAGGTTCAATACCAAGTGAGTTCAGAAAAATCCAACCTCTCATAGATTTAGATCTCTCTGATAACTTCCTTTCAGGGTCCATTCCTGAAAGCTTTTCAGAGCTGAAGAACCTAAGACTGCTCAGTCTCATGTACAATGACATGAGTGGCACTGTTCCCGAAGGCATTGCACAACTTCCATCCTTGGAAACTCTTCTCATTTGGAACAATCGCTTCTCTGGATCACTTCCACAGAGCTTAGGCAGGAACTCCAAACTCAAATGGGTGGATGTCTCCACAAACAATTTCATTGGCAGCATACCCCCAGACATTTGTGTGAATGGAGAACTATTTAAGCTTATCCTGTTTTCTAACAAATTTACAGGTGATCTTTCATCAATCTCCGACTGTCCTTCCCTTGTTCGTCTTCGCCTAGAAGATAATTCATTCTCAGGAAAGATCCCTTTAAAATTCAGCCATCTTCCTGATATCTCATACGTTGATCTGTCCAGGAACAATTTTGTTGGTGGGATTCCCTCAGATATTTCTCAAGCTACTCAACTGGAGTATTTCAATGTCTCTTATAATCTGCAATTAGGGGGAACCATCCCTGCAAAAGTGTGGTCTTTGCCCCTACTTCTAAATTTTTCAGCATCTTCTTGTGGTATTTTAGGCAATCTTCCCCCATTTGAGTCCTGCAAATCAATATCAGTTATTGATCTTGATAGGAACAACTTATCTGGAATCATCCCAAACAGTGTTTCCAAATGTCAAGCTCTTGAGATAATCAAATTATCTGACAATAATATGACAGGTCAAATACCTGAGGAGCTTGCCAGTATCCCTGTTCTTGGTGTAGTAGACTTGTCTAACAATAAGTTCAATGGCCCCATACCTGCAAAGTTTGGTAGTTCTTCAAGTTTACAACTTTTCAATGTGTCTTTCAACAATATGTCTGGTTCAATACCCAAAGGAAAGTCATTCAAATTAATGGGTAGCAGTGCATTTGTTGGAAATTCAGAGCTATGTGGAGAACCTCTGAGACCATGTTCTGATTCAGTCGGAATATTGGGCAGCAAAGGCACGTGGAAGCTTACACGTATTGTTCTACTCTCTGTAGGGTTGCTAGTAATCCTTCTAGGATTGGCTTTTGGAATACTTTATTTTAGGAAGGGTGTCAAAAGTCAATGGAAGATGGTTTCATTTGTTGGACTCCCTCAATTCACAGCAAATGATGTTTTGACAAGCTTCAGTGCCACAAAACCAACAGAAGTTCTATCACCATCACCTGAAGTTACAAAAGCAGTTCTGCCAACAGGAATAACAGTTTTAGTCAAGAAGATTGAATGGGAAGCAAGGAGTATTAAGGTGGTATCAGAATTTATAATGCGACTAGGAAATGCAAGGCACAAGAATTTAATCAGACTGTTGGGTTTTTGCCACAACCAGCATCTAGTCTATCTTTTGTATGACTACTTGCCCAATGGGAATTTGGCTGAGAAAATTGGAATGAAATGGAATTGGGCAGCTAAATTCAGAACAGTGGTTGGAATTGCAAGGGGTCTTTGCTTCCTTCATCATGACTGTTACCCACCTATACCCCATGGAGACTTGAAGTCCAGCAATGTTGTGTTTGACGAAAATATGGAACCCCATTTGGCAGAATTTGGGTTCAAACATGTGTTGAAGTTGAGTAAAGGCTCATCTCCAACCAAAACTAACCGGGAAACAGAATACAATGAAGGCATGAAAGAGGAACTCTGCATGGATGTCTACAAATTTGGGGAGTTGATACTGGAAATTTTAACTGGTGGAAGGTTGACAATTGCAGAATCTAGCATTCACAGCAAATCAAGGGAGGTTCTTCTAAGAGAAGTTTACAATGATGATGAAGTGAGTTCCGCAAGTTCATTGGAAGAAATTAAACTGGTTCTTGAGGTTGCTATGCTTTGCACTAGAAGCAGATCATCCGATCGGCCATCCATGGAAGATGCACTGAAGCTTTTGTCAGGGTTAAAGAGTCTAGAAGATGGCAGAACTTCAAAAGAAGGGAAATAA 2949 0.414 MDMDELDHVPKVTIVPLPSSLQVPMEIFKCLYINLLATFMLSAVLAIDPYSEALLSLKSELVDDDNSLHDWVVPPSGGSLTGKSYACSWSGIKCDKDSTIVTSIDLSMKKLGGVLSGKQFSVFTKLADLNLSHNFFSGQLPAEIFNLTSLKSLDISRNNFSGHFPGGIPRLQNLAVLDAFSNSFSGPLPAEFSQLEYLKVLNLAGSYFRGSIPSEYGSFRSLEFLHLAGNSLTGSIPPELGNLKTVTHMEIGYNFYQGFIPPQLGNMSQLQYLDIAGANLSGPIPKELSNLTSLQSLFLFRNQLTGSIPSEFRKIQPLIDLDLSDNFLSGSIPESFSELKNLRLLSLMYNDMSGTVPEGIAQLPSLETLLIWNNRFSGSLPQSLGRNSKLKWVDVSTNNFIGSIPPDICVNGELFKLILFSNKFTGDLSSISDCPSLVRLRLEDNSFSGKIPLKFSHLPDISYVDLSRNNFVGGIPSDISQATQLEYFNVSYNLQLGGTIPAKVWSLPLLLNFSASSCGILGNLPPFESCKSISVIDLDRNNLSGIIPNSVSKCQALEIIKLSDNNMTGQIPEELASIPVLGVVDLSNNKFNGPIPAKFGSSSSLQLFNVSFNNMSGSIPKGKSFKLMGSSAFVGNSELCGEPLRPCSDSVGILGSKGTWKLTRIVLLSVGLLVILLGLAFGILYFRKGVKSQWKMVSFVGLPQFTANDVLTSFSATKPTEVLSPSPEVTKAVLPTGITVLVKKIEWEARSIKVVSEFIMRLGNARHKNLIRLLGFCHNQHLVYLLYDYLPNGNLAEKIGMKWNWAAKFRTVVGIARGLCFLHHDCYPPIPHGDLKSSNVVFDENMEPHLAEFGFKHVLKLSKGSSPTKTNRETEYNEGMKEELCMDVYKFGELILEILTGGRLTIAESSIHSKSREVLLREVYNDDEVSSASSLEEIKLVLEVAMLCTRSRSSDRPSMEDALKLLSGLKSLEDGRTSKEGK 982
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi23g00040 982 SMART serkin_6 728 966 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi23g00040 982 FunFam Leucine-rich repeat receptor-like protein kinase TDR 705 789 - -
Sebi23g00040 982 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 198 960 - -
Sebi23g00040 982 SUPERFAMILY RNI-like 103 426 - -
Sebi23g00040 982 Gene3D Phosphorylase Kinase; domain 1 725 787 - -
Sebi23g00040 982 SUPERFAMILY Protein kinase-like (PK-like) 728 966 IPR011009 -
Sebi23g00040 982 Gene3D Transferase(Phosphotransferase) domain 1 788 980 - -
Sebi23g00040 982 Gene3D Ribonuclease Inhibitor 495 651 IPR032675 -
Sebi23g00040 982 SMART LRR_typ_2 147 171 IPR003591 -
Sebi23g00040 982 SMART LRR_typ_2 291 314 IPR003591 -
Sebi23g00040 982 SMART LRR_typ_2 363 387 IPR003591 -
Sebi23g00040 982 SMART LRR_typ_2 219 243 IPR003591 -
Sebi23g00040 982 Gene3D Ribonuclease Inhibitor 49 172 IPR032675 -
Sebi23g00040 982 Gene3D Ribonuclease Inhibitor 173 247 IPR032675 -
Sebi23g00040 982 ProSitePatterns Serine/Threonine protein kinases active-site signature. 830 842 IPR008271 GO:0004672|GO:0006468
Sebi23g00040 982 SUPERFAMILY L domain-like 321 628 - -
Sebi23g00040 982 FunFam Leucine-rich repeat receptor-like protein kinase TDR 213 317 - -
Sebi23g00040 982 FunFam Leucine-rich repeat receptor-like protein kinase 50 212 - -
Sebi23g00040 982 Pfam Leucine rich repeat N-terminal domain 52 95 IPR013210 -
Sebi23g00040 982 Gene3D Ribonuclease Inhibitor 248 494 IPR032675 -
Sebi23g00040 982 Pfam Protein tyrosine and serine/threonine kinase 736 964 IPR001245 GO:0004672|GO:0006468
Sebi23g00040 982 ProSiteProfiles Protein kinase domain profile. 694 969 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi23g00040 982 Pfam Leucine rich repeat 533 591 IPR001611 GO:0005515
Sebi23g00040 982 Pfam Leucine rich repeat 293 351 IPR001611 GO:0005515
Sebi23g00040 982 FunFam Leucine-rich repeat receptor-like protein kinase TDR 790 974 - -
Sebi23g00040 982 FunFam Leucine-rich repeat receptor-like protein kinase TDR 336 649 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi23g00040 Sebi-Chr23 619201 622706 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi23g00040 28 967 Receptor kinase-like Gene Family AT5G51350 54.774 0.0 966
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Sebi23g00040 PK_Tyr_Ser-Thr 2.6e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi23g00040 - - aprc:113852384 1663.66