Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi23g00037 ATGGCTTCTGATGACATCTCATTTGAAGATCTCAAGAATGAGAATGTTGATCTTGAAAACATTCCAGTTGAGGAGGTCTTCAAACAGCTAAAATGTAGTAGAGAGGGTCTTTCATCTGAGGATGGAGAGAAGAGGCTTCAAATTTTTGGCCCCAACAAGCTAGAGGAGAAAACAGAAAGCAAGTTCCTCAAGTTCTTGGGTTTTATGTGGAATCCTTTATCATGGGTTATGGAATCAGCTGCTATCATGGCCATTGTATTGGCCAATGGAGGGGGCAAGCCACCGGATTGGCAAGATTTCACTGGTATTGTTGTGTTGCTTATCATCAACTCAACCATCAGTTTCATTGAGGAAAACAATGCAGGTAATGCTGCAGCTGCTTTGATGGCTGGTCTTGCACCCAAAACCAAGGTTCTGAGGGATGGAAAATGGAGTGAGCAAGAGGCATCAATTTTGGTACCAGGAGATGTGATTAGCATCAAGTTGGGAGACATTGTCCCTGCTGATGCCCGTCTGTTGGAGGGTGATCCTCTCAAGATTGACCAATCTGCCCTCACTGGTGAGTCCTTGCCAGTCACAAGGCACCCTGGTGATGAGGTCTTCTCTGGTTCCACTTGCAAACAAGGTGAGATTGAGGCTGTTGTCATTGCCACTGGTGTCCACACCTTCTTTGGTATTCCAATTGCCATGCCAACTGTCTTGTCTGTGACCATGGCTATTGGATCTCACCGCCTGTCTGAGCAAGGAGCCATCACTAAGAGGATGACAGCCATTGAAGAAATGGCAGGAATGGATGTTCTCTGCAGTGACAAGACTGGAACTCTCACCCTCAATAAGCTTTCCGTGGACAAGAACTTGATTGAGGTGTTTCCTGCTGGCTTGGACAAGGATGGCCTTGTCTTATATTCTGCCAGGGCTTCTAGGACTGAAAACCAAGATGCCATTGATGCATCAATTGTGGGAATGTTGGGTGACCCCAAGGAGGCAAGAGCAGGAATCACTGAGGTGCATTTCTTGCCCTTTAATCCTGTGGACAAGCGCACAGCTATTACCTACATTGATAGCAATGGTGACTGGCACAGAAGCAGCAAAGGTGCTCCTGAGCAAATCATTGAGCTTTGTGCCCTCAAGGGAGAGACTTTGAAAAAGGCCCACAAAATCATTGATGAGTTTGCTGACCGTGGTCTGCGTTCCCTAGGTGTTGCTCGCCAGACTGTTTCAGCAAAGAACAAGGAGAGTGAAGGAGAACCATGGGAATTCTTGGGTCTCTTACCCCTCTTTGACCCTCCAAGGCATGACAGTGCTGAGACTATTCGCCGTGCTCTTGACCTTGGTGTCAATGTTAAGATGATCACTGGTGACCAACTTGCTATTGGGAAAGAAACTGGTCGCAGGCTTGGAATGGGAACCAACATGTACCCTTCATCCTCCCTTCTTGGCCAAAGTAAGGATGAGGCCATTGCATCAATCCCAATTGATGAACTCATTGAGAAGGCTGATGGCTTTGCTGGAGTCTTCCCTGAGCACAAGTATGAGATTGTGAAGAGGCTTCAGGATAGAAAACACATTTGTGGAATGACTGGAGATGGTGTGAATGATGCACCAGCACTCAAGAAGGCAGACATTGGTATTGCAGTGGCTGATGCAACTGATGCTGCTAGGAGTGCCTCGGATATTGTCTTGACTGAGCCTGGTCTCAGTGTGATTGTGAGTGCTGTGTTGACAAGCAGGGCCATCTTCCAGAGGATGAAGAACTACACAATCTATGCTGTTTCCATCACAATCCGTATTGTCCTTGGATTCTTGCTTGTTGCTTTAATCTGGAAGTTTGACTTCTCTCCTTTCATGGTTTTGATCATTGCTATCTTGAATGATGGAACCATCATGACGATCTCTAAGGATAGGGTGAAGCCATCTCCTGTGCCTGACTCATGGAAGCTAAAGGAAATCTTTGCCACTGGAGTTGTTCTTGGAACTTACATGGCCATCATGACTGCAGTTTTCTTCTATGCTGTTCATGACACAGATTTCTTCACTAGACTTTTTGGTGTCCACTCAATTGCAGACAGTGAGGAGCAACTTAACTCAGCTCTCTACCTTCAAGTGAGTATCATTAGTCAGGCTCTAATTTTTGTGACTAGATCAAGGAGCTGGTCATTTGTTGAACGCCCTGGCTTGATGCTTATTGGAGCCTTCATTGTTGCACAGTTGCTTGCCACTATCATTGCTGTGTATGCACACTGGGACTTTGCTAGAATCAATGGAATTGGGTGGAACTGGGCTGGAGCAATCTGGGTCTACAGCATTGTTACATACATCCCTCTTGACATCCTCAAGTTTTTCATTCGTATGGGACTCACAGGCAGTGCTTGGGACAGCATGCTCCAAAACAAGACTGCATTCACAACAAAGAAAGACTATGGTAGGGAAGAGAGGGAGGCTCAATGGGCTGTGGCTCAACGCACAATGCATGGTCTTAAAGTTCCTGAAACACACAAGAGCAATCACCATGAGCAATCTGAAATTGCTGAGCAGGCCAAGAGACGTGCTGAGGCAGCTAGTTAA 2565 0.4635 MASDDISFEDLKNENVDLENIPVEEVFKQLKCSREGLSSEDGEKRLQIFGPNKLEEKTESKFLKFLGFMWNPLSWVMESAAIMAIVLANGGGKPPDWQDFTGIVVLLIINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGKWSEQEASILVPGDVISIKLGDIVPADARLLEGDPLKIDQSALTGESLPVTRHPGDEVFSGSTCKQGEIEAVVIATGVHTFFGIPIAMPTVLSVTMAIGSHRLSEQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDKNLIEVFPAGLDKDGLVLYSARASRTENQDAIDASIVGMLGDPKEARAGITEVHFLPFNPVDKRTAITYIDSNGDWHRSSKGAPEQIIELCALKGETLKKAHKIIDEFADRGLRSLGVARQTVSAKNKESEGEPWEFLGLLPLFDPPRHDSAETIRRALDLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSSLLGQSKDEAIASIPIDELIEKADGFAGVFPEHKYEIVKRLQDRKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIVSAVLTSRAIFQRMKNYTIYAVSITIRIVLGFLLVALIWKFDFSPFMVLIIAILNDGTIMTISKDRVKPSPVPDSWKLKEIFATGVVLGTYMAIMTAVFFYAVHDTDFFTRLFGVHSIADSEEQLNSALYLQVSIISQALIFVTRSRSWSFVERPGLMLIGAFIVAQLLATIIAVYAHWDFARINGIGWNWAGAIWVYSIVTYIPLDILKFFIRMGLTGSAWDSMLQNKTAFTTKKDYGREEREAQWAVAQRTMHGLKVPETHKSNHHEQSEIAEQAKRRAEAAS 854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi23g00037 854 FunFam Plasma membrane ATPase 280 427 - -
Sebi23g00037 854 ProSitePatterns E1-E2 ATPases phosphorylation site. 270 276 IPR018303 -
Sebi23g00037 854 NCBIfam HAD-IC family P-type ATPase 103 220 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Sebi23g00037 854 NCBIfam HAD-IC family P-type ATPase 502 614 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Sebi23g00037 854 Gene3D - 225 754 - -
Sebi23g00037 854 SFLD C1.7: P-type atpase like 250 579 - -
Sebi23g00037 854 NCBIfam plasma-membrane proton-efflux P-type ATPase 225 745 IPR006534 GO:0008553|GO:0016020|GO:0120029
Sebi23g00037 854 Gene3D - 265 564 IPR023214 -
Sebi23g00037 854 SFLD p-type atpase 250 579 IPR044492 -
Sebi23g00037 854 FunFam Plasma membrane ATPase 134 218 - -
Sebi23g00037 854 SMART Cation_ATPase_N_a_2 17 89 IPR004014 -
Sebi23g00037 854 SUPERFAMILY HAD-like 264 574 IPR036412 -
Sebi23g00037 854 SUPERFAMILY Calcium ATPase, transduction domain A 134 226 IPR008250 -
Sebi23g00037 854 Gene3D - 134 218 - -
Sebi23g00037 854 FunFam Plasma membrane ATPase 421 575 - -
Sebi23g00037 854 PANTHER CALCIUM-TRANSPORTING ATPASE 225 822 - -
Sebi23g00037 854 Gene3D - 96 224 - -
Sebi23g00037 854 CDD P-type_ATPase_H 36 780 IPR006534 GO:0008553|GO:0016020|GO:0120029
Sebi23g00037 854 PRINTS H+-transporting ATPase (proton pump) signature 558 583 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Sebi23g00037 854 PRINTS H+-transporting ATPase (proton pump) signature 527 543 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Sebi23g00037 854 PRINTS H+-transporting ATPase (proton pump) signature 699 720 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Sebi23g00037 854 PRINTS H+-transporting ATPase (proton pump) signature 499 515 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Sebi23g00037 854 PRINTS H+-transporting ATPase (proton pump) signature 384 402 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Sebi23g00037 854 SUPERFAMILY Calcium ATPase, transmembrane domain M 16 784 IPR023298 -
Sebi23g00037 854 Pfam haloacid dehalogenase-like hydrolase 264 541 - -
Sebi23g00037 854 PRINTS P-type cation-transporting ATPase superfamily signature 527 546 - -
Sebi23g00037 854 PRINTS P-type cation-transporting ATPase superfamily signature 444 454 - -
Sebi23g00037 854 PRINTS P-type cation-transporting ATPase superfamily signature 550 562 - -
Sebi23g00037 854 PRINTS P-type cation-transporting ATPase superfamily signature 422 433 - -
Sebi23g00037 854 PRINTS P-type cation-transporting ATPase superfamily signature 181 195 - -
Sebi23g00037 854 MobiDBLite consensus disorder prediction 828 854 - -
Sebi23g00037 854 Gene3D - 280 427 IPR023299 GO:0000166
Sebi23g00037 854 Pfam E1-E2 ATPase 133 225 - -
Sebi23g00037 854 Pfam Cation transporter/ATPase, N-terminus 20 83 IPR004014 -
Sebi23g00037 854 FunFam ATPase 4 plasma membrane-type 512 754 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi23g00037 Sebi-Chr23 604505 608930 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi23g00037 5 853 Primary Pumps ATPases AT2G07560 76.503 0.0 1379
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi23g00037 K01535 - gmx:100798717 1408.66