Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi23g00007 ATGCAAGGAATCAACTCTCTCTTGAACTCTTCTCAAATCTCTCTCCAAGACCTCCACAACAACAACAATCAGATCCAAAATTCACACATGAACCACCAACAACTCAACCCTCACTTCGACCCAACTTCCCACGATGATTTCCTTGACCAAATGCTCTCTACCCTTCCTTCTTGCTCCTGGCCTGACCTCAACCCCAACAACAAACCCTTGTGGGACCCTAATAACGCCCCTGATATCAAGCCCGCTGAAACGACGCCGTCTACCGCTGAGAATGTCGCTTTCCCTTATGATGAACACGCCACCTTAGCATCCAAGTTCCGTAACCACCAGATCAGCGCCACCTCTCCTTCAACCAAAGCCGCTCTCATGCTTCACCAACAGCTTCTCATGTCCAGAGACCCTAACCTTCTCCAGATGCCGCTTTCCTTGCCTGGAAACGACGTCGTTGACGCCACCACCTTCAAATCTCCCAATCCTAGTGGTGAAGCTTCAGTTCAAGCTCTCTACAACGGCTTCGCCGGATCTCTGCATGGCACCGGTCAAGCCTCCAACCAGGCTCAGCATTTTCAACATCCTCAGAATCCGATTCAGGGGCAGAATTTCGGAGGTGCAGTTGCGGGAGGCGCAACGAACCAAGCAGCGGCGAGCGGTTCAGCCGGTGGAGCACCGGCTCAGCCGAGGCCGAGGGTTCGGGCTAGGAGAGGTCAAGCGACGGACCCACACAGCATCGCTGAAAGGTTACGAAGGGAGAGAATTGCAGAGAGGATGAAGGCCCTGCAGGAACTGGTCCCCAATGCCAACAAGACAGACAAGGCATCCATGCTGGATGAGATCATCGATTACGTGAAGTTCTTGCAGCTCCAAGTCAAGGTTCTGAGCATGAGCAGATTGGGCGGTGCAGCTGCTGTCGCTCCCCTTGTTGCTGATATGTCCTCTGAGGGAGGCGGTGACTGCATCCAAACCAACGGCAACAGCAACGGCGGTGGGGCCCTCACCCGGAACTCAAACAGCAACCAAACGACAGCGTCAACCTCAAACGACAGTCTCACTATGACGGAGCACCAGGTGGCCAAGCTCATGGAAGAGGACATGGGCTCCGCCATGCAATACCTTCAGGGTAAGGGTCTCTGTCTCATGCCAATTTCCCTCGCCACTGCCATCTCCACCGCCACGTGTCACACCAGGAACCCCTTGATGAACGGCAACAACCAGATCCCGAACAACAACGGCGGTGGCGGGACCCACACGAACCCTGCCAATGGCGAAGGGCCGTCGTCTCCGAGCATGTCCGTGCTGACGGTGCAATCGGCCGTTGACAGTGCCGTGAAAGACGCTGCCTCCGTTTCGAAGCCGTGA 1356 0.5538 MQGINSLLNSSQISLQDLHNNNNQIQNSHMNHQQLNPHFDPTSHDDFLDQMLSTLPSCSWPDLNPNNKPLWDPNNAPDIKPAETTPSTAENVAFPYDEHATLASKFRNHQISATSPSTKAALMLHQQLLMSRDPNLLQMPLSLPGNDVVDATTFKSPNPSGEASVQALYNGFAGSLHGTGQASNQAQHFQHPQNPIQGQNFGGAVAGGATNQAAASGSAGGAPAQPRPRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADMSSEGGGDCIQTNGNSNGGGALTRNSNSNQTTASTSNDSLTMTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCHTRNPLMNGNNQIPNNNGGGGTHTNPANGEGPSSPSMSVLTVQSAVDSAVKDAASVSKP 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi23g00007 451 FunFam Transcription factor bHLH66 233 298 - -
Sebi23g00007 451 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 236 285 IPR011598 GO:0046983
Sebi23g00007 451 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 234 296 IPR036638 GO:0046983
Sebi23g00007 451 SMART finulus 242 291 IPR011598 GO:0046983
Sebi23g00007 451 MobiDBLite consensus disorder prediction 397 432 - -
Sebi23g00007 451 Gene3D - 231 293 IPR036638 GO:0046983
Sebi23g00007 451 MobiDBLite consensus disorder prediction 179 218 - -
Sebi23g00007 451 Pfam Helix-loop-helix DNA-binding domain 241 286 IPR011598 GO:0046983
Sebi23g00007 451 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 71 387 - -
Sebi23g00007 451 MobiDBLite consensus disorder prediction 179 242 - -
Sebi23g00007 451 MobiDBLite consensus disorder prediction 318 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi23g00007 Sebi-Chr23 173915 176993 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi23g00007 213 450 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G24260 60.920 3.35e-91 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sebi23g00007 HLH 1.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi23g00007 - - gmx:100806899 539.265