Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi23g00003 ATGGGTTTAGCATCTTCTAAGGCTTACAACTTCTCTTCTTCTGTTTGTTCATGGCAAGGGGTTACCTGTGATGCCAAGAAAGAACATGTTGTTGGGTTAGTTGTTTCTGGTATGGGCCTCTCTGGTCCTATTCCAGATACCACCATTGGCAAGCTTAGCAAGATTCAATCTTTGGACCTCAGCAACAACAAAATCACTGACTTACCTTCAGATTTCTGGAGTTTAAGCTTTCTCAAGAGCCTTAACCTCTCCTCTAATCAGATTTCTGGCTCATTGACTAACAACATTGGAAACTTTGGCTTGCTAGAAGTATTTGACTTATCCAGCAACAATTTCTCTGGGGAAATTCCTGAAGCTATTAGTTCTTCTGTGAGTCTGAAGGTCCTCAAACTTGATCACAACAGGTTTGAGCAAAGTATACCTTCTGGGATTCTCAAGTGTCAGTCTCTTGTTTCAATTGATCTTTCATCAAATCAGCTAAGTGGGGCACTTCCAGATGGTTTTGGTGCTGCTTTTCCTAAGCTCACAAGCTTGAACCTTGCTGGGAATAATATTTATGGACGTGATTCAGATATTTCTGGGTTAAAGTCCATTGTGAGTCTCAACATATCTGGCAATTCATTTCAGGGTTCTGTCATGAGCATGTTTCAGGGAAGGCTGGAAGTTATGGACCTTAGCAGAAACCAATTCCAAGGTCACATTTCTCAGGTACAGTCCATCTCTAATTACAATTGGTCTCATTTAGTTTATCTGGATTTGTCAGAGAATCAGCTTAGTGGGGAAATTTTCCAAAATTGGAATGAATCCCAGAATCTAAAGCACCTTAATCTTGCTCATAATAGATTTACCAGACAGAAATTCCCCAAGATTGAAATACTCTCAAGATTGGAATATCTAAACTTGTCCAAAACTAGTCTGATTGGTTACATTCCTGCAGAAATTTCACAACTTAGTAATTTGAAAACACTTGATATTTCTATGAATCATCTTATAGGGCAAATCCCCTTTCTAAGGAATAAAAACCTCCAAATTCTTGACCTTTCCAACAACAATTTGAGTGGAGAAGTCCCTCCATCAGTCTTAGAGAAACTCCCATGGATGGAGAAATACAATTTCTCTTATAATAACTTAACCCTCTGTGCTTTGGAAATCAAACCAGCTATCCTCAAAACAGCATTCTTTGGATTAGTGAACAGTTGTCCAATTGCTGCAAACCCAAGTCTCTTTAAGAAAAGAGCCACTCAACACAAGGGAATGAAGCTAGCTCTGGCATTGACCCTTTCAATGATCTGCTTGCTTGTTGGACTTTTGTTTATAGCAGTTAGTCGCCTAAGGAAAACAAAATCTTGGCCAGTTAAGCAAGCTTCATACAAAGAAGAACAAAATATGTCAGGTCCCTTTTCATTCCACACTGATTCAACCACTTGGGTGGCTGATGTTAAGCAACCAACATCTGTCCCAGTAGTAATCTTTGAGAAGCCACTGTTGAATATCACATTTGCAGACCTCTTGGCTGCAACTTCAAATTTTGATAGGGGTACCCTTTTGGCAGAAGGAAAATTCGGGCCTGTTTATAGAGGTTTTCTACCTGGTGGCATTCATGTAGCAGTTAAAGTTCTGGTTGTTGGATCTACTTTGACAGATAAAGAAGCTGCAAGAGAGCTTGAGTATCTTGGTAGAATCAAGCACCCCAATCTTGTTCCTCTAACTGGATATTGTGTAGCTGGGGATCAGAGAATTGCCATATATGATTACATGGAGAATGGGAACTTGCAAAACTTGCTTTATGACTTGCCACTTGGGTATCCTGATGAGAAAGAAGCAACTTTGGTAAGTTGGGTCAGAGGATTGGTGAGAAAGAACATAGCTTCAAGAGCTATTGATCCAAAAATTCATGACACAGGACCAGAAAAGCAAATGGAGGAGGCCCTTAAGATTGGTTATCTATGCACTGCTGACCTTCCTTCCAAGAGACCAAGCATGCAGCAGATAGTTGGACTTCTTAAAGATATTGAACCTGCTGCTAATTAG 2031 0.4003 MGLASSKAYNFSSSVCSWQGVTCDAKKEHVVGLVVSGMGLSGPIPDTTIGKLSKIQSLDLSNNKITDLPSDFWSLSFLKSLNLSSNQISGSLTNNIGNFGLLEVFDLSSNNFSGEIPEAISSSVSLKVLKLDHNRFEQSIPSGILKCQSLVSIDLSSNQLSGALPDGFGAAFPKLTSLNLAGNNIYGRDSDISGLKSIVSLNISGNSFQGSVMSMFQGRLEVMDLSRNQFQGHISQVQSISNYNWSHLVYLDLSENQLSGEIFQNWNESQNLKHLNLAHNRFTRQKFPKIEILSRLEYLNLSKTSLIGYIPAEISQLSNLKTLDISMNHLIGQIPFLRNKNLQILDLSNNNLSGEVPPSVLEKLPWMEKYNFSYNNLTLCALEIKPAILKTAFFGLVNSCPIAANPSLFKKRATQHKGMKLALALTLSMICLLVGLLFIAVSRLRKTKSWPVKQASYKEEQNMSGPFSFHTDSTTWVADVKQPTSVPVVIFEKPLLNITFADLLAATSNFDRGTLLAEGKFGPVYRGFLPGGIHVAVKVLVVGSTLTDKEAARELEYLGRIKHPNLVPLTGYCVAGDQRIAIYDYMENGNLQNLLYDLPLGYPDEKEATLVSWVRGLVRKNIASRAIDPKIHDTGPEKQMEEALKIGYLCTADLPSKRPSMQQIVGLLKDIEPAAN 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi23g00003 676 SUPERFAMILY L domain-like 9 382 - -
Sebi23g00003 676 PRINTS Leucine-rich repeat signature 317 330 - -
Sebi23g00003 676 PRINTS Leucine-rich repeat signature 248 261 - -
Sebi23g00003 676 SMART LRR_typ_2 172 195 IPR003591 -
Sebi23g00003 676 SMART LRR_typ_2 148 170 IPR003591 -
Sebi23g00003 676 SMART LRR_typ_2 124 147 IPR003591 -
Sebi23g00003 676 SMART LRR_typ_2 52 74 IPR003591 -
Sebi23g00003 676 SMART LRR_typ_2 75 99 IPR003591 -
Sebi23g00003 676 SMART LRR_typ_2 293 317 IPR003591 -
Sebi23g00003 676 SMART LRR_typ_2 340 363 IPR003591 -
Sebi23g00003 676 FunFam Putative LRR receptor-like serine/threonine-protein kinase 471 585 - -
Sebi23g00003 676 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 122 243 IPR046959 -
Sebi23g00003 676 ProSiteProfiles Protein kinase domain profile. 510 676 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi23g00003 676 FunFam Calmodulin-binding receptor kinase CaMRLK 218 336 - -
Sebi23g00003 676 Pfam Leucine Rich Repeat 341 360 IPR001611 GO:0005515
Sebi23g00003 676 SMART tyrkin_6 510 668 IPR020635 GO:0004713|GO:0006468
Sebi23g00003 676 SUPERFAMILY Protein kinase-like (PK-like) 483 601 IPR011009 -
Sebi23g00003 676 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 69 164 - -
Sebi23g00003 676 Gene3D Transferase(Phosphotransferase) domain 1 591 676 - -
Sebi23g00003 676 Gene3D Ribonuclease Inhibitor 142 240 IPR032675 -
Sebi23g00003 676 Gene3D Ribonuclease Inhibitor 241 337 IPR032675 -
Sebi23g00003 676 Gene3D Ribonuclease Inhibitor 338 382 IPR032675 -
Sebi23g00003 676 Pfam Protein tyrosine and serine/threonine kinase 514 597 IPR001245 GO:0004672|GO:0006468
Sebi23g00003 676 ProSiteProfiles Leucine-rich repeat profile. 54 75 IPR001611 GO:0005515
Sebi23g00003 676 Pfam Leucine Rich repeat 246 261 IPR001611 GO:0005515
Sebi23g00003 676 Pfam Leucine Rich repeat 269 282 IPR001611 GO:0005515
Sebi23g00003 676 Pfam Leucine rich repeat 126 185 IPR001611 GO:0005515
Sebi23g00003 676 Pfam Leucine rich repeat 44 88 IPR001611 GO:0005515
Sebi23g00003 676 ProSiteProfiles Leucine-rich repeat profile. 341 363 IPR001611 GO:0005515
Sebi23g00003 676 Gene3D Ribonuclease Inhibitor 3 141 IPR032675 -
Sebi23g00003 676 Gene3D Phosphorylase Kinase; domain 1 471 585 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi23g00003 Sebi-Chr23 45439 47892 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi23g00003 40 597 Receptor kinase-like Gene Family AT5G07280 29.340 2.21e-63 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-2 Sebi23g00003 PK_Tyr_Ser-Thr 1.2e-11 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi23g00003 - - gmx:100807051 1038.1