Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi239g00044 ATGACGAATCAGAATGTGGTGACTCCTGAAATCAAGTCATGTATTAGTATGACAACGCTTATTGCCGTGGCAGCTTCCATTTCAAACTCACCCGTGTTACCAACTGAATCTCTTGCTGTTCTTGGTGGGTTCTTAGGCTTTCCAAACAAAAATTTTATGAAAAGGTTGGAAGGTTCTAAAGTTAACACCTGGATTGATTCAATGAGAGCTTCTTCTCCAACTCGTGTCAAATCTAACCTAACTGCTTCAGAAAACCAAGAAACGAGTTCTTGGATTCTTTATCATCCTTCAGCGCTGAACAAGTTTGATCAGATAACATATAACTCAAAAAGAAAACAGATTGTGATTTTTCTTGACTACGATGGAACTCTCTCTCCGATTGTTGCAGATCCAGATAAAGCTTTCATGACAAGAAAGATGAGAGCAACGCTTAAGGACATAGCAAGACATTTTCCCACTGCCATAGTTACTGGAAGATGCAGAGACAAGGTATTTAACTTTGTAAAATTAGGAGAATTGTACTATGCAGCAAGCCATGGAATGGACATTATGGGGCCAACAAAAAGCCCAAGTGCAGAGAAAGGTAATAATAATGAAGCACTGCGGTTCCAACCTGCGACTCAATTTCTACCAATGATCGATGAGGTGTACAAAATACTGCTAGAAAAAACAAAGTCTGTCCCAGGGGCTAAGGTAGAGAACAACAAATTTTGCTTGTCCGTGCACTTCCGTTGTGTTGACGAAAAGAGTTGGGCACCATTGGCGGAGAAAGTTAGATTGGTGCTTAATGAGTACCCACAACTTAAGCTAACCCAAGGAAGAAAAGTGCTAGAGATTCGACCAACCATCAAATGGGACAAGGGCAGGGCACTTGAATTCTTGTTAGAATCACTAGGATACGAGAATTCTAATGACGTATTTCCGATCTATATTGGTGATGATCGAACTGATGAAGATGCTTTTAAGGTTTTACGCAGAAGGGGTCAGGGGATTGGGATTCTTGTTTCTAGAGTTCCAAAAGAAACAGATGCTTCCTACACCTTGCAAGATCCATCCCAGGCAAGTCTTTTTTTTAAATGCCTATCTAGCTAG 1092 0.4066 MTNQNVVTPEIKSCISMTTLIAVAASISNSPVLPTESLAVLGGFLGFPNKNFMKRLEGSKVNTWIDSMRASSPTRVKSNLTASENQETSSWILYHPSALNKFDQITYNSKRKQIVIFLDYDGTLSPIVADPDKAFMTRKMRATLKDIARHFPTAIVTGRCRDKVFNFVKLGELYYAASHGMDIMGPTKSPSAEKGNNNEALRFQPATQFLPMIDEVYKILLEKTKSVPGAKVENNKFCLSVHFRCVDEKSWAPLAEKVRLVLNEYPQLKLTQGRKVLEIRPTIKWDKGRALEFLLESLGYENSNDVFPIYIGDDRTDEDAFKVLRRRGQGIGILVSRVPKETDASYTLQDPSQASLFFKCLSS 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi239g00044 363 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 51 361 IPR044651 GO:0004805|GO:0005992
Sebi239g00044 363 Pfam Trehalose-phosphatase 117 352 IPR003337 GO:0003824|GO:0005992
Sebi239g00044 363 SUPERFAMILY HAD-like 115 359 IPR036412 -
Sebi239g00044 363 Gene3D - 206 282 - -
Sebi239g00044 363 NCBIfam trehalose-phosphatase 112 361 IPR003337 GO:0003824|GO:0005992
Sebi239g00044 363 CDD HAD_TPP 115 351 - -
Sebi239g00044 363 Gene3D - 116 348 IPR023214 -
Sebi239g00044 363 FunFam Trehalose 6-phosphate phosphatase 212 363 - -
Sebi239g00044 363 FunFam Trehalose 6-phosphate phosphatase 206 282 - -
Sebi239g00044 363 NCBIfam HAD-IIB family hydrolase 116 327 IPR006379 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi239g00044 Sebi-Chr239 891401 893296 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi239g00044 110 358 Trehalose Biosynthesis Gene Families AT1G70290 27.237 3.95e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi239g00044 K01087 - gmx:100788641 574.704