Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi239g00042 ATGGCAGCTATGATGGATTTCTACAGCAGCACACAATTTCACTCAGATCCATTCAGGGGTGACGGGTTATCCAACAGCCAAAATTTCATAGGCTTTGAGCAATCAAGTTCCATTCTTGGCCTCAACCACCTAACCCCATCTCAGATCAATCAGATCCAGGCTCAAATCCAGCAACAAAACTTGTCATGGAATCAGCGTCATCATCAGCCTCAGCATCTCAATCTCAACACCCTTAGCTTCCTCGGTCCTAAACCAATCCCAATGAAGCACGTGGCCACACCTCCAAAGCCCACGAAGCTTTACAGAGGGGTGAGGCAGAGGCACTGGGGGAAATGGGTCGCTGAGATTAGACTTCCAAAGAACCGAACAAGGCTCTGGCTTGGTACCTTTGACACAGCAGAAGAAGCTGCTTTGGCTTACGATAAGGCCGCTTACAAGCTCCGAGGTGACTTTGCAAGGCTCAATTTCCCCAATCTCCGACACCAAGGTTCCTCTGTTGGTGGAGATTTTGGTGAGTACAAGCCTCTTCATTCCTCTGTGGATGCAAAGCTTCAAGCCATTTGTGAAGGCTTGGCTGAGATGCAGAAACAGGGGAAGTCAGAGAAGTCTCAGAGATCGTCCAAGAGGTCGAAAGTTGCTTCCAAGGTGGCTCCTCCGCCGGAGAAGGAGGAATCGGTTGATTTGAAGAAAGGTTCGGTGAAGTCTTGTTGCAAGGTTGAACCTTCGTTGTCTCCCGTGATGACAGAGAGCGAAGGATCTGAAGGTTCTTCGCCACTTTCGGATCTTACCTTTGGTGATGTGAGCGAGCCACAGTGGGAAGGTGATTCGGATAATTTCAATCTGCTCAAGTACCCTTCTTATGAGATCGATTGGGATTCCCTGTGA 885 0.4904 MAAMMDFYSSTQFHSDPFRGDGLSNSQNFIGFEQSSSILGLNHLTPSQINQIQAQIQQQNLSWNQRHHQPQHLNLNTLSFLGPKPIPMKHVATPPKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPNLRHQGSSVGGDFGEYKPLHSSVDAKLQAICEGLAEMQKQGKSEKSQRSSKRSKVASKVAPPPEKEESVDLKKGSVKSCCKVEPSLSPVMTESEGSEGSSPLSDLTFGDVSEPQWEGDSDNFNLLKYPSYEIDWDSL 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi239g00042 294 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 24 294 - -
Sebi239g00042 294 CDD AP2 99 159 IPR001471 GO:0003700|GO:0006355
Sebi239g00042 294 SMART rav1_2 100 163 IPR001471 GO:0003700|GO:0006355
Sebi239g00042 294 MobiDBLite consensus disorder prediction 246 264 - -
Sebi239g00042 294 SUPERFAMILY DNA-binding domain 100 158 IPR016177 GO:0003677
Sebi239g00042 294 Gene3D AP2/ERF domain 100 158 IPR036955 GO:0003700|GO:0006355
Sebi239g00042 294 MobiDBLite consensus disorder prediction 195 278 - -
Sebi239g00042 294 MobiDBLite consensus disorder prediction 215 234 - -
Sebi239g00042 294 FunFam Ethylene-responsive transcription factor 2 99 158 - -
Sebi239g00042 294 ProSiteProfiles AP2/ERF domain profile. 100 157 IPR001471 GO:0003700|GO:0006355
Sebi239g00042 294 Pfam AP2 domain 101 149 IPR001471 GO:0003700|GO:0006355
Sebi239g00042 294 PRINTS Ethylene responsive element binding protein signature 123 139 IPR001471 GO:0003700|GO:0006355
Sebi239g00042 294 PRINTS Ethylene responsive element binding protein signature 101 112 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi239g00042 Sebi-Chr239 861450 862544 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi239g00042 7 294 AP2-EREBP Transcription Factor Family AT1G78080 56.623 2.52e-95 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Sebi239g00042 AP2 6.1e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi239g00042 K09286 - gmx:732559 353.599