Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi239g00005 ATGGACATATATGAGTCATTCCAGCAAGTTAGCATGTGGGGGGACAACTTTAAAGTTGATGGCAGCCTGAATTCAATTGCTTCCCCAATGTTACTGGTGAATACTACCATAGAGAACAAGCCTGAATATATTCCTCATGAACCAAGGGAGCCTTCTGGAACTGATCAAGAGACTACAAATAAAGATGTTAGTAAGGTTCTAAGACGCCTTGCTCAGAATAGAGAGGCTGCTCGGAAAAGTAGGCTGCGGAAAAAGGCTTATGTTCAACAATTAGAAACAAGCAGATTGAAACTCATGCAATTGGAACTGGATATTATGAAAGCAAGAAAGCAGGGTCTGTACATTGGCAATGCATTAGATGCCAGTTACATGGGATCTTCTGAAACAATAAACCCAGGAATTGTTGCATTTGAAATTGAATATGGACATTGGGTTGAAGAGCAACAAAGACAGAATGAAGAACTTAGAAATGCATTTCAAACTCACGCATCTGATGTACAGCTTCGTCTACTTGTTCAGAGTACCTTGAACCATTACTCAAATCTTTTCAGAATGAAAGCTGATGCTGCAAAGGTTGATGTCCTCTATTTAATCTCTGGTGTGTGGAAAGCATCAGTGGAGCGCATTTTCCTTTGGATTGGAGGATCACGCCCGTCACAGCTTCTAAATCTCATTGTGCCACAACTTGAGCCTTTGACTGAACCACAAATTGTTAGTATTAACAAACTTCGCCAATCATCTCAGCAAGCTGAAGATGCTCTTTCACAAGGATTGGAAAAACTCCAGCAGAGTCTGGTCAATGACATGGCAGTTGACCCTATGAGTGTAGGAAACTTTGGAATTCAAATGTCTATTGCCATAGAGAAATTTGAGGCACTAGAAAGCTTTGTAAGCCAGGGCAGCGTTTCACCGAATCGGTTCGAAAATCACAGGGAAACTATGAGCAATCTGAGAACCCTATGCAGGCCACACACGGTGTTCTCCTTCATCAGTTGCAGACACCAATTTCGATTTAGGGCTTCGTTTCGGAACCCTAATTGCAAGCCCCGTTTGCCATCGCCGTCGCTGTATTCTACATGGCTCGGTTCGAACTGTACTGTGCCCTGGTTTCGCGTGAATCAGAGGAGGACTGTGGCCAAAGCATCAAGCTGGGATGAACAAAAGTCCCCATATGAAACTCTTGGTAAAGAAGATAATAGGTATGGGAATTTCCTGTGTATACTTGTTTTGACTGTTTCTTCTTCAATTGTCTATGCTGAAACAATAGAATTGGAAAGAGATGCTGACGAGGAGCAGATAAAGAATGCTTACAGACGTTTGGCCAAATTTTATCATCCAGATGTTTATGATGGTAGAGGAACCCTTGAGGAAGGTGAAACAGCAGAAGCTAGGTTCATCAAGATTCAAGCTGCTTATGAATTGCTTATAGATGAAGAGAAGCGAAGACAGTATGACATGGATAACCGGGTCAATCCTATGAAGGCATCTCAAGCATGGATGGAATGGCTTATAAAAAAACGAAAAGCTTTTGATCAGCGGGGTCATATGGCAATTGCTGCTTGGGCTGAGCAGCAACAGCGCGAGTTGAATCTTCGTGTGCGCCAACTTTCTCGTTCAAAGATTGATCCAGATGAAGCAAGGAAGATCTTGGCAAGAGAAAAGAAGGCTTCAGCTGAAAATTTCAGCAATACCCTTAAAAGGCACACACTTATACTGAAGAAAAGAGATTTGATGCGAAGAAAGGCTGAGGAAGAAAAGAAGAAAATTATCAGCCAGCTCTTAGCAGCAGAAGGTCTTGAGCTTGATTCAGAGAGTGATGATGCAATGTAG 1830 0.423 MDIYESFQQVSMWGDNFKVDGSLNSIASPMLLVNTTIENKPEYIPHEPREPSGTDQETTNKDVSKVLRRLAQNREAARKSRLRKKAYVQQLETSRLKLMQLELDIMKARKQGLYIGNALDASYMGSSETINPGIVAFEIEYGHWVEEQQRQNEELRNAFQTHASDVQLRLLVQSTLNHYSNLFRMKADAAKVDVLYLISGVWKASVERIFLWIGGSRPSQLLNLIVPQLEPLTEPQIVSINKLRQSSQQAEDALSQGLEKLQQSLVNDMAVDPMSVGNFGIQMSIAIEKFEALESFVSQGSVSPNRFENHRETMSNLRTLCRPHTVFSFISCRHQFRFRASFRNPNCKPRLPSPSLYSTWLGSNCTVPWFRVNQRRTVAKASSWDEQKSPYETLGKEDNRYGNFLCILVLTVSSSIVYAETIELERDADEEQIKNAYRRLAKFYHPDVYDGRGTLEEGETAEARFIKIQAAYELLIDEEKRRQYDMDNRVNPMKASQAWMEWLIKKRKAFDQRGHMAIAAWAEQQQRELNLRVRQLSRSKIDPDEARKILAREKKASAENFSNTLKRHTLILKKRDLMRRKAEEEKKKIISQLLAAEGLELDSESDDAM 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi239g00005 609 Gene3D - 64 116 - -
Sebi239g00005 609 Pfam Seed dormancy control 153 226 IPR025422 GO:0006351|GO:0043565
Sebi239g00005 609 Coils Coil 145 165 - -
Sebi239g00005 609 SMART dnaj_3 416 480 IPR001623 -
Sebi239g00005 609 ProSiteProfiles dnaJ domain profile. 417 488 IPR001623 -
Sebi239g00005 609 SUPERFAMILY Chaperone J-domain 407 486 IPR036869 -
Sebi239g00005 609 Coils Coil 419 439 - -
Sebi239g00005 609 FunFam BZIP family transcription factor 64 113 - -
Sebi239g00005 609 PRINTS DnaJ domain signature 460 480 IPR001623 -
Sebi239g00005 609 PRINTS DnaJ domain signature 419 437 IPR001623 -
Sebi239g00005 609 PRINTS DnaJ domain signature 506 525 IPR001623 -
Sebi239g00005 609 PRINTS DnaJ domain signature 437 452 IPR001623 -
Sebi239g00005 609 MobiDBLite consensus disorder prediction 42 63 - -
Sebi239g00005 609 MobiDBLite consensus disorder prediction 39 63 - -
Sebi239g00005 609 Coils Coil 91 111 - -
Sebi239g00005 609 PANTHER TRANSCRIPTION FACTOR TGA9 1 315 - -
Sebi239g00005 609 ProSitePatterns Nt-dnaJ domain signature. 465 484 IPR018253 -
Sebi239g00005 609 ProSiteProfiles DOG1 domain profile. 134 350 IPR025422 GO:0006351|GO:0043565
Sebi239g00005 609 CDD DnaJ 418 477 IPR001623 -
Sebi239g00005 609 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 68 83 IPR004827 GO:0003700|GO:0006355
Sebi239g00005 609 SUPERFAMILY Leucine zipper domain 65 98 IPR046347 GO:0003700|GO:0006355
Sebi239g00005 609 Pfam bZIP transcription factor 65 94 IPR004827 GO:0003700|GO:0006355
Sebi239g00005 609 Gene3D DnaJ domain 411 512 IPR036869 -
Sebi239g00005 609 SMART brlzneu 61 119 IPR004827 GO:0003700|GO:0006355
Sebi239g00005 609 Pfam DnaJ domain 421 485 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi239g00005 Sebi-Chr239 45619 52826 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi239g00005 1 300 Calmodulin-binding Proteins AT5G10030 50.993 4.73e-103 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Sebi239g00005 DOG1 3.3e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi239g00005 - K14431 gmx:100794268 477.633