Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi238g00061 ATGGTAGTATTAGAGTGGTTTTGCGTTGGTGCTGTTCTGCTGTGTGTATCGTTGAGCAGACGAGGATGGCAACGCGTCTTCGCAGGCAGGGTGGTTATCATCAACCTTCCTCCATCGAGGAAGTTCGAACCCTTTGGATTGGGGGATTTGCAGTATTGGTCGAAACGAACCTATCTCATCACTGCTTCGCTCACACCGGTGAGCAGAAAGGGTTCTTCAGAGTTACAATGGGACCCAATGCCCGGAACCGAACAAACCTTCCGGTTGAATTGGGCTTCTTTCGGTATTGGGGAACGCCGTCCCGATGCGGGTCCTAACACTCCATCTTCGTTGTCACTGACCCTAACACTGGCCGCTCCAAGGTTATGGTTTGTTAAATTTTCTGATGAGAATGAAAGGAACCGTGCCATGACCGAAATGAATGGTGTTTATTGCTCCACTAGGCCTATGCGCATTAGTGCTGCTACTCCTAAGAAGACCAATGCTTTTCAACACCCATATGCTGCTCCTGCTCCTAAAGCAATATATCCCATCCCGGCATACACTACCCCCGTGAATACAGTTCCACCAGATTATGATGTAAATAATACTACTCTTTTTGTTGGTAATTTGGATCTTAATGTCTCAGAAGAGGAGCTGAAGCAAAACTTTATGCAATTTGGAGAAATTGTCTCTGTCAAAATTCAGGCTGGCAAAGGATGTGGTTTTATTCAATTTGGGACCAGAGCATCTGCTGAAGAAGCCATTCAGAAGATGCAGGGAAAGATGATAGGTCAACAAGTGATCCGAGTTTCTTGGGGTAGGACCCCAACTAGACAGGATTTACCTGGTGGCTGGGGACCACAGATGGATCCAAGTCAATGGAGTGCCTACTATGGGTATGGACAGGGTTATGAAGCCTATGCTTATGGGGCCACTCAGGATCCTTCAATGTATGCATATGCTGCATATGCACAATATCCCCAACAGGTTGAAGGTGCTCAAGATGCATCAGCTATGTGTGTACCTACCATGGAACAAAGGGAGGAGTTATGA 1035 0.4676 MVVLEWFCVGAVLLCVSLSRRGWQRVFAGRVVIINLPPSRKFEPFGLGDLQYWSKRTYLITASLTPVSRKGSSELQWDPMPGTEQTFRLNWASFGIGERRPDAGPNTPSSLSLTLTLAAPRLWFVKFSDENERNRAMTEMNGVYCSTRPMRISAATPKKTNAFQHPYAAPAPKAIYPIPAYTTPVNTVPPDYDVNNTTLFVGNLDLNVSEEELKQNFMQFGEIVSVKIQAGKGCGFIQFGTRASAEEAIQKMQGKMIGQQVIRVSWGRTPTRQDLPGGWGPQMDPSQWSAYYGYGQGYEAYAYGATQDPSMYAYAAYAQYPQQVEGAQDASAMCVPTMEQREEL 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi238g00061 344 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 197 269 IPR000504 GO:0003723
Sebi238g00061 344 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 124 273 - -
Sebi238g00061 344 Gene3D - 184 274 IPR012677 -
Sebi238g00061 344 SUPERFAMILY RNA-binding domain, RBD 124 162 IPR035979 GO:0003676
Sebi238g00061 344 FunFam polyadenylate-binding protein RBP45 180 275 - -
Sebi238g00061 344 SMART rrm1_1 198 265 IPR000504 GO:0003723
Sebi238g00061 344 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 199 263 IPR000504 GO:0003723
Sebi238g00061 344 SUPERFAMILY RNA-binding domain, RBD 176 285 IPR035979 GO:0003676
Sebi238g00061 344 Gene3D - 121 169 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi238g00061 Sebi-Chr238 1307809 1311892 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi238g00061 121 275 Eukaryotic Initiation Factors Gene Family AT1G34140 29.375 2.83e-12 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi238g00061 - - tpra:123894020 387.497