Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi238g00060 ATGGCTGCAACTCCTACCAAGTCTTTCCAATCTCCCTCAAAACCCTACCTCCGATCGCAATCCAATGCGAAATCCACACCCGCTGTAACCCCCGTCACACCACAATCCCTACCTATTCGCAGATCCACGCGTTCAAAGTCCCTCCACTTTGATTCCCCGAACCTCCCCATGAATCTTGCGCAAATCAACTCGAAACTCCGAAAAGCAGGAGAGCCAGGGAGAATCTCGATCAACCTAGGTCTCGTCGATCCATTGATTACACTAAGGATTCTGGCAAAGATAAAGTCATCACCCGCACAAGTGCAACTAGAGGAAATGGAAATGCTTCTGTTGAAGCATCAAAGAAGAGAAATGAGAAGGGGGAAATCGGAGAATAGGCTAAAGAGTGTGGAGTTGCCAAAGCGCCATACTTACTATAAAAAAGTGGTTTATGATGGGGGCGAGTTTGAAGTCGGGGATGCTGTTTATGTGAAGAGGAGAGAAGATGCTACTTCTGATGATGAAGATCCCGAAGTGGAGGAGTGTAGGTTGTGTTTTTGTTCTGGCAATGAGATCATGATTGAGTGTGACGAATGTTTAGGTGGGTTTCATTTGAAATGCTTGAAACCGCCATTGAAGGACGTTCCTGAAGGGGATTGGATATGTGGGTTCTGTGAGGCTCGTAAGATGGGTAGGGAAGTTAATTTTCCAAAGCCTCCACATGGTAAGAAACTAGTTAGGACAATGAGGCAGAAGCTTTTATCCAGTGATTTGGGGCTGCTCATATTGAGAGAAGTAGATGGCAACTACTGGTGTCGAGTTCGGTGGTATATAATCCCAGAAGAGACTTCTGCTGGGCGACAACCACATAACCTGAGCAGGGAGCTATATCAAACCAATGATTTTGCAAACATTGAGATGGAATCTGTCCTTAGACACTGCTATGTCATGACCCCAAAGAATATGCTAAAGCAAAAGATGAGGGAGATGATATATTCTTCTGTGAATATGAATATGACATCCACTGGCACAGTTTCAAACGTCTTGCTGATATTGACAATGAAAGAGAGAATGGTGGAGAGACTGACAGTGATGAAGACTGGAATGTTGACAAGGAATCAGACTCTGACACTGATGAAGATGTTGAATATGAAGAGGAAAATATTAAAAATGCACAATCTCAACCCTCAACAGGCCATCAAATCTGCACAAGGGGCGGTTCTTTGGACTTCAGAAGATAGGCACAAAAGAATTCCACAGCACATAAGGTCTCACAAACAGACTGATCTTGAGAGAGCAAAGGCTACACTGTTGTTAGCATCACTGCCTAAATCCTTACCTTGTAGAAATAAAGAAATGGAGGAGATAACTACATTTATTAAAGGTGCTATTTCTGATGATCAATGTTTGGGACGTTGCCTCTACATTCATGGTGTTCCCGGAACTGGCAAAACAATGAGTGTATTATCAGTAATGAGGAGTTTGAGGTCAGAAGTTGATGCAGGAAACATCAAACCCTACTGTTTTGTGGAGATTAATGGTCTGAAATTGGCATCACCAGAGAATATTTATAAGGTCATATATGAGGCATTAAATGGACACAGGGTCAGCTGGAAAAAGGCTCTCCACCTGCTAAATGAGAGGTTTGTAGAGGGGAAGAAAACTGGAGAAGAGGCTGACAGGCCATGTATTTTGCTAATAGATGAACTTGATCTTCTTGTGACCAGAAACCAGTCGGTTTTGTACAATATTCTTGATTGGCCTACTAAGCCACATTCCAAGCTAATTGTGATAGGGATAGCAAATACTATGGATCTTCCAGAGAAGTTGCTTCCTCGTATATCAAGCCGAATGGGTATACAGAGGCTTTGCTTTAGCCCATATAATTATCAGCAGCTTCAAGAAATCATTTCGAGTCGCCTCAAGGGAAATGATGTATTTGAAAAACAAGCTATAGAATTTGCTTCAAGAAAGGTTGCAGCAATCTCAGGAGATGCACGTCGTGCTCTGGAGATATGCAGACGTGCAGCTGAAATAGCAGATTATCGTATGAAGGAGATAACTTCAAATACTGATATTGATGCTGCAGGAAAGGGACTTGTTGTTATGGCAGACGTTGAAGCAGCCATTCAAGAAATGTTCCAAGCACCTCATATTCAATTAGCAATGACGGTTTCAGCTCTGTGTACCAGCAACGGAGAAGTTTTTCCTGGATATGATACCCTGCTGCAAGTTGGCTGTAAGCTAGGCGAATGCAGGGTTATTTTATGTGAAGCAGGTGCCAAGCACAGGTTGCAAAAATTGCAGCTTAATTTCCCGAGGTTAGTTCTCAAAGCTCATATCAGCTTTTCAATTGCTTCTATAGAAATAAATGATGGGATTATGACCGAGTAG 2373 0.4269 MAATPTKSFQSPSKPYLRSQSNAKSTPAVTPVTPQSLPIRRSTRSKSLHFDSPNLPMNLAQINSKLRKAGEPGRISINLGLVDPLITLRILAKIKSSPAQVQLEEMEMLLLKHQRREMRRGKSENRLKSVELPKRHTYYKKVVYDGGEFEVGDAVYVKRREDATSDDEDPEVEECRLCFCSGNEIMIECDECLGGFHLKCLKPPLKDVPEGDWICGFCEARKMGREVNFPKPPHGKKLVRTMRQKLLSSDLGLLILREVDGNYWCRVRWYIIPEETSAGRQPHNLSRELYQTNDFANIEMESVLRHCYVMTPKNMLKQKMREMIYSSVNMNMTSTGTVSNVLLILTMKERMVERLTVMKTGMLTRNQTLTLMKMLNMKRKILKMHNLNPQQAIKSAQGAVLWTSEDRHKRIPQHIRSHKQTDLERAKATLLLASLPKSLPCRNKEMEEITTFIKGAISDDQCLGRCLYIHGVPGTGKTMSVLSVMRSLRSEVDAGNIKPYCFVEINGLKLASPENIYKVIYEALNGHRVSWKKALHLLNERFVEGKKTGEEADRPCILLIDELDLLVTRNQSVLYNILDWPTKPHSKLIVIGIANTMDLPEKLLPRISSRMGIQRLCFSPYNYQQLQEIISSRLKGNDVFEKQAIEFASRKVAAISGDARRALEICRRAAEIADYRMKEITSNTDIDAAGKGLVVMADVEAAIQEMFQAPHIQLAMTVSALCTSNGEVFPGYDTLLQVGCKLGECRVILCEAGAKHRLQKLQLNFPRLVLKAHISFSIASIEINDGIMTE 790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi238g00060 790 SUPERFAMILY FYVE/PHD zinc finger 163 224 IPR011011 -
Sebi238g00060 790 Gene3D - 116 331 IPR043151 -
Sebi238g00060 790 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 165 216 IPR013083 -
Sebi238g00060 790 ProSiteProfiles Zinc finger PHD-type profile. 172 221 IPR019787 -
Sebi238g00060 790 ProSiteProfiles BAH domain profile. 219 346 IPR001025 GO:0003682
Sebi238g00060 790 PANTHER CELL DIVISION CONTROL PROTEIN 6-RELATED 277 714 - -
Sebi238g00060 790 Pfam ATPase family associated with various cellular activities (AAA) 468 613 IPR003959 GO:0005524|GO:0016887
Sebi238g00060 790 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 433 684 IPR027417 -
Sebi238g00060 790 FunFam Origin recognition complex subunit 1 170 237 - -
Sebi238g00060 790 MobiDBLite consensus disorder prediction 1 53 - -
Sebi238g00060 790 ProSitePatterns Zinc finger PHD-type signature. 175 218 IPR019786 -
Sebi238g00060 790 FunFam Origin recognition complex subunit 1 616 708 - -
Sebi238g00060 790 Gene3D - 419 616 IPR027417 -
Sebi238g00060 790 FunFam Origin recognition complex subunit 1 420 619 - -
Sebi238g00060 790 SMART AAA_5 463 617 IPR003593 GO:0016887
Sebi238g00060 790 Pfam PHD-finger 178 220 IPR019787 -
Sebi238g00060 790 SMART PHD_3 177 219 IPR001965 -
Sebi238g00060 790 Pfam AAA lid domain 641 674 IPR041083 -
Sebi238g00060 790 Gene3D - 617 691 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi238g00060 Sebi-Chr238 1299708 1305732 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi238g00060 3 766 Core DNA Replication Machinery Family AT4G14700 54.724 0.0 801
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Sebi238g00060 AAA 7.6e-20 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi238g00060 K02603 - gmx:100814940 1006.51