Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi238g00054 ATGGTGAAGGACAAGCAAGGCACCTACGCCCCTAAACAAAACAAAGTCGTCGTCCTTTGGGACCTCGATAACAAACCCCCACGTGGCCCACCCTACAACGCCGCTCTCTCTCTCAAAACCCTCGCTCAACACTTCGGCGACGTCGTAGACATCTCCGCCTACGCCAACCGCCACGCCTTCATCCATCTCCCTCAATGGGTCCTCGACCAACGCCGTGAACGCAAAAACCTCGACATCCTCGAGCGCAAGGGCGTCGTCACACCTTCCGAGCCTTACGTCTGCAACGTCTGTGGCCGCAAATGCAAGACCAACTTCAACCTCAAGAAGCACTTCAAGCAGCTCCACCAGCGCGAGCGTCAGAAGAAGCTGAACCGGTTGAACTCCCTTAAGGGGAAGAAGCGACAGCGCTATAAGGAGCGGTTCATTCGTGGGAACCATAAGTACAATGAGGCTGCTAGGGCTCTTGTTACGCCTAAGGTTGGGTATGGTCTTGCTTCGGAGTTGCGGCGTGCTGGGGTTTTTGTGAAGACGGTGGAGGATAAGCCTCAGGCTGCGGATTGGGCGTTGAAGAGGCAGATGCAACACTCGATGAGTAGAGGGATTGATTGGTTGTTTCTGGTTTCGGATGATTCGGATTTCTCCGAGATGTTGAGGAGGGCGAGGGAGGCCAATTTGGGGACTGTGGTTGTTGGGGATATGGATAGGGCGTTGGGGCGGCATGCTGATTTGTGGGTTCCTTGGCTTGCGGTTGAGAATGGAGAGATTTCGGAGAAAGATTTGGTGCCCAGAACAGAGGGAGGAGACAGGATTTGGATGGGTTGTTTTTGA 828 0.5423 MVKDKQGTYAPKQNKVVVLWDLDNKPPRGPPYNAALSLKTLAQHFGDVVDISAYANRHAFIHLPQWVLDQRRERKNLDILERKGVVTPSEPYVCNVCGRKCKTNFNLKKHFKQLHQRERQKKLNRLNSLKGKKRQRYKERFIRGNHKYNEAARALVTPKVGYGLASELRRAGVFVKTVEDKPQAADWALKRQMQHSMSRGIDWLFLVSDDSDFSEMLRRAREANLGTVVVGDMDRALGRHADLWVPWLAVENGEISEKDLVPRTEGGDRIWMGCF 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi238g00054 275 ProSiteProfiles Zinc finger C2H2 type domain profile. 92 120 IPR013087 -
Sebi238g00054 275 SMART c2h2final6 92 115 IPR013087 -
Sebi238g00054 275 CDD PIN_LabA-like 102 232 - -
Sebi238g00054 275 Coils Coil 112 132 - -
Sebi238g00054 275 SUPERFAMILY beta-beta-alpha zinc fingers 85 120 IPR036236 -
Sebi238g00054 275 Gene3D - 8 248 - -
Sebi238g00054 275 ProSitePatterns Zinc finger C2H2 type domain signature. 94 115 IPR013087 -
Sebi238g00054 275 PANTHER C2H2-TYPE DOMAIN-CONTAINING PROTEIN 4 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi238g00054 Sebi-Chr238 1174964 1175791 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi238g00054 1 262 C2H2 Transcription Factor Family AT5G52010 76.336 2.81e-157 442
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sebi238g00054 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi238g00054 - - zju:107419957 483.411