Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi238g00050 ATGGGAGCTTGTTGCTCTAAATTCTGTATATGCTGGTGGCCTTCCAATACAAAATCAAATCTTCAAGACTTGCCTGATAATGAAGATGGGAACAAGGGTGAGGAGAAAGGTGCTGGCTTTACTGAGTACAGCTTGGATCAATTGAGAACTGCCACCTCAGGATTTTCACCTGATAACATTGTCTCAGAGCACGGTGAGAAGGCTCCCAATGTTGTCTACAAAGGAAGGGTTGAAGATGATAGGTTGGTTGCTGTGAAGCGTTTCAACAAGTCTGCTTGGCCTGATCCTCGGCAGTTCCTAGAGGAAGCAAGAGCAGTGGGGCAGCTTCGGAATGAGAGGTTAGCTAACTTGGTTGGTTGTTGCTGTGAAGGAGAAGAGAGAGTGCTTGTTGCAGAGTTTATGCCCAACGAAACTCTCTCCAAACATCTCTTTCACTGGGAGACCCAGCCAATGAAATGGGCAATGAGGCTAAGAGTGGCCTCGTATTTAGCACAAGCGTTGGAATACTGCAGCAGTAGAGGAAGGGCATTGTATCATGATCTTAATGCTTATAGAATTTTGTTTGATCAGGATGGCAACCCTAGACTCTCTTGTTTTGGACTAATGAAAAACAGCAGAGATGGTAGAAGCTACAGTACAAATTTAGCCTTCACCCCTCCTGAGTATTTGAGGACAGGAAGAATCATCCCAGAAAGTGTAATTTACAGTTTTGGAACACTTCTGCTTGATCTTCTGAGTGGCAAGCATATCCCACCCAGCCATGCACTTGACCTTATTCGAGGCAAAAATTTTCAGTTGCTTATGGACTCGTGTTTGGAAGGTCATTTTTCAGATGATGATGGAACTGAGTTAGTGAGATTAGCTACACGTTGTTTGCAGTATGAACCTCGTGAGAGGCCAAATGCCAAGTCACTTGTCACTGCTCTAACTCCTCTTCAAAAAGAAACTTCTGTTCCATCTCTTGTTTTATTGGGCATACCGGATGAGAGTGCATCATCAAAGGAAACAATTTCACTGACACCATTTGGTGAAGCTTGTTCAAAAAGAGATCTTAATTCAATACATGAAATTTTGGAAAGAGCAGGGTACAAGGATGATGAGGATGTTGCAAATGAGCTTTCCTTTCAAATGTGGACAGATCAAATACAAGAAACACTGAATTCAAAGAAGCACGGAGATTCTGCTTTTCATGCCAGAGACTACTCTAGGGCCATTGACTTCTATACTCAATTCATCGATGGTGGGACCATGGTATCACCAACTGTGTTTGCAAGGCGGTGCTTATGTTATCTGATGAACAACATGGCACAAGAAGCACTAGGAGATGCCATGCAAGCTCAATCAGTATCTCCCACCTGGCCTACTGCATTCTATCTCCAAGCAGTAGCTCTCTTCAGCCTTGGGATGGACATTGATGCACAGGAAAGTCTTAAAGACGGCACAACACTGGAAACCAGAAAGCATACAAATTGA 1473 0.4358 MGACCSKFCICWWPSNTKSNLQDLPDNEDGNKGEEKGAGFTEYSLDQLRTATSGFSPDNIVSEHGEKAPNVVYKGRVEDDRLVAVKRFNKSAWPDPRQFLEEARAVGQLRNERLANLVGCCCEGEERVLVAEFMPNETLSKHLFHWETQPMKWAMRLRVASYLAQALEYCSSRGRALYHDLNAYRILFDQDGNPRLSCFGLMKNSRDGRSYSTNLAFTPPEYLRTGRIIPESVIYSFGTLLLDLLSGKHIPPSHALDLIRGKNFQLLMDSCLEGHFSDDDGTELVRLATRCLQYEPRERPNAKSLVTALTPLQKETSVPSLVLLGIPDESASSKETISLTPFGEACSKRDLNSIHEILERAGYKDDEDVANELSFQMWTDQIQETLNSKKHGDSAFHARDYSRAIDFYTQFIDGGTMVSPTVFARRCLCYLMNNMAQEALGDAMQAQSVSPTWPTAFYLQAVALFSLGMDIDAQESLKDGTTLETRKHTN 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi238g00050 490 SUPERFAMILY Protein kinase-like (PK-like) 40 315 IPR011009 -
Sebi238g00050 490 FunFam probable serine/threonine-protein kinase At4g35230 383 490 - -
Sebi238g00050 490 FunFam probable serine/threonine-protein kinase At5g41260 135 326 - -
Sebi238g00050 490 FunFam probable serine/threonine-protein kinase At4g35230 30 133 - -
Sebi238g00050 490 Gene3D Tetratricopeptide repeat domain 383 490 IPR011990 GO:0005515
Sebi238g00050 490 Pfam Protein tyrosine and serine/threonine kinase 72 309 IPR001245 GO:0004672|GO:0006468
Sebi238g00050 490 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 11 488 IPR045845 GO:0004672|GO:0009742
Sebi238g00050 490 SUPERFAMILY TPR-like 387 486 IPR011990 GO:0005515
Sebi238g00050 490 Gene3D Transferase(Phosphotransferase) domain 1 135 326 - -
Sebi238g00050 490 Gene3D Phosphorylase Kinase; domain 1 30 133 - -
Sebi238g00050 490 ProSiteProfiles Protein kinase domain profile. 58 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi238g00050 Sebi-Chr238 1072651 1076451 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi238g00050 14 309 Glycoside Hydrolase AT3G07070 31.481 8.06e-38 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Sebi238g00050 PK_Tyr_Ser-Thr 1.5e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi238g00050 - - gmx:100804210 879.011